Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0464 ATGGCTTTGATAACTCTGTTTTCTATTTTATTCTTTATGCTAATGGCCTCTTCAAGCAATGCCTACTGGCCACCTTCACCTGATTACAGGCCAAGTTCCAAATTCAGGCCTGTGAACTTCTATAGAGGGTTTAATAATCTTTGGGGTCCTCAGCACCAAAGCATAGACCAAAATGCATTAACAATATGGCTTGATAGCTCCTCAGGAAGTGGCTTCAAGTCAAATCGACCATTTCGATCCGGTTACTTTGGTGCTTCCATTAAGCTCCATCCTGGCTATACTGCAGGAGTTATAACAGCTTTCTATCTTTCTAACAATGAGGCACATCCGGGCTTCCATGATGAAGTGGACATTGAGTTTCTTGGGACAACATTTGGAAAGCCTTATACTTTACAGACCAATGTTTATATAAGAGGGAGTGGGGATGGCACAATTATTGGCAGAGAAATGAAGTTCCACCTTTGGTTTGATCCTACCCAAAACTTTCATCACTATGCTATACTTTGGAGTCCTAAGGAAATAATATTCCTTGTGGATGATATTCCCATAAGGAGGTACCCTAGGAAGAGTGCTGAAACATTTCCACTAAGGCCAATGTGGCTTTATGGTTCAATATGGGATGCCTCATCATGGGCAACAGAAGATGGTAAGTACAAGGCTGATTACAGATACCAACCTTTTGTTGCAAAGTACACCAACTTCAGGGCTGGTGGTTGCTCAGCCTATGCCTCTCGTCGGTGCCGCCCGGTCTCGGCCTCGCCATATCGCTCCGGTGGCTTGACCAGACGCCAATATTGGGCCATGAGATGGGTGCAAAAATACCACATGGTCTATAACTATTGCCAAGACCCCAAAAGAGATCACAGACTAACACCTGAGTGTTGGGGGTAA 891 0.4433 MALITLFSILFFMLMASSSNAYWPPSPDYRPSSKFRPVNFYRGFNNLWGPQHQSIDQNALTIWLDSSSGSGFKSNRPFRSGYFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGTIIGREMKFHLWFDPTQNFHHYAILWSPKEIIFLVDDIPIRRYPRKSAETFPLRPMWLYGSIWDASSWATEDGKYKADYRYQPFVAKYTNFRAGGCSAYASRRCRPVSASPYRSGGLTRRQYWAMRWVQKYHMVYNYCQDPKRDHRLTPECWG* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0464 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 231 IPR000757 GO:0004553|GO:0005975
Gso10g0464 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 295 IPR044791 GO:0004553
Gso10g0464 296 PIRSF EndGlu_transf 2 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso10g0464 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4 295 - -
Gso10g0464 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 257 294 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gso10g0464 296 Gene3D - 20 294 - -
Gso10g0464 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 62 282 IPR013320 -
Gso10g0464 296 Pfam Glycosyl hydrolases family 16 42 223 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0464 Gso-Chr10 5055456 5058340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0464 1 294 Glycoside Hydrolase AT3G44990 64.286 3.99e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0464 K08235 - gmx:100813742 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1533 19 44266221 44268998 Gso10g0464 10 5055456 5058340 PCT
Gso3g1554 3 41464223 41466823 Gso10g0464 10 5055456 5058340 PCT
Gso10g0464 10 5055456 5058340 Gso19g1533 19 44266221 44268998 PCT
Gso10g0464 10 5055456 5058340 Gso3g1554 3 41464223 41466823 PCT