Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1550 ATGGAAACTTTCCTCTTCACCTCAGAATCTGTAAACGAAGGCCATCCCGACAAGCTGTGTGACCAGGTTTCAGATGCCATCCTAGATGCATGCTTGGAGCAAGACCCAGAAAGCAAGGTTGCTTGCGAGACCTGTACAAAAACTAACATGGTTATGGTCTTTGGTGAGATTACAACCAAGGCCAGCGTGAACTACGAGAAAATAGTTCGAGACACTTGCAAAGGCATTGGGTTTGTGTCACCAGATGTTGGTCTTGATGCTGACAACTGCAAAGTTCTGGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAAGGAGTTCACGGTCATATGACCAAGAAACCTGAGGAAATTGGTGCTGGTGACCAAGGCCACATGTTTGGTTATGCTACAGACGAAACACCTGAGTTAATGCCACTCACTCATGTGCTTGCTACTAAACTTGGTGCCAGGCTCACTGAGGTGAGAAAGAACAAAACATGCCCCTGGCTGAGGCCAGATGGTAAAACCCAAGTGACAGTTGAGTACAAGAACGATGGTGGAGCCATGATTCCTATTCGGGTTCACACAGTTCTCATCTCAACTCAGCATGATGAAACTGTCACAAATGAACAAATTTCTAAAGAATTGAAAGAGCATGTGATCAAACCTGTCATCCCAGCTAAATACCTTGATGATAAGACCATCTTCCACCTCAACCCCTCTGGTAGGTTTGTGATTGGTGGACCCCATGGAGATGCAGGACTCACTGGAAGGAAGATCATTATCGACACCTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCCTTCTCCGGCAAGGACCCAACCAAGGTTGATAGGAGTGGTGCATACATTGTTAGGCAAGCAGCCAAGAGCGTGGTAGCTTCAGGGCTTGCACGACGTTGCATTGTGCAGGTTTCTTATGCAATTGGAGTTCCAGAGCCACTTTCTGTGTTTGTAGACACATACCAAACGGGGAAGATTCCAGACAAGGACATATTGGCTCTAATTAAGGAGAAATTTGATTTCAGGCCAGGAATGATAGCAATCCATCTTGATCTCATGAGAGGAGGCAACTTCAGGTACCAGAAAACTGCTGCTTATGGGCATTTTGGACGTGACGATCCTGATTTCACTTGGGAGACCGTGAAGATCCTCAAGCCTAACGCTTGA 1173 0.4672 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKASVNYEKIVRDTCKGIGFVSPDVGLDADNCKVLVNIEQQSPDIAQGVHGHMTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYKNDGGAMIPIRVHTVLISTQHDETVTNEQISKELKEHVIKPVIPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYQTGKIPDKDILALIKEKFDFRPGMIAIHLDLMRGGNFRYQKTAAYGHFGRDDPDFTWETVKILKPNA* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1550 390 CDD S-AdoMet_synt 5 384 - -
Gso3g1550 390 ProSitePatterns S-adenosylmethionine synthase signature 2. 266 274 IPR022631 GO:0004478|GO:0006556
Gso3g1550 390 SUPERFAMILY S-adenosylmethionine synthetase 240 386 IPR022636 GO:0004478|GO:0006556
Gso3g1550 390 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478|GO:0006556
Gso3g1550 390 Hamap S-adenosylmethionine synthase [metK]. 2 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Gso3g1550 390 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Gso3g1550 390 Gene3D - 11 279 - -
Gso3g1550 390 SUPERFAMILY S-adenosylmethionine synthetase 115 239 IPR022636 GO:0004478|GO:0006556
Gso3g1550 390 Pfam S-adenosylmethionine synthetase, central domain 117 238 IPR022629 GO:0004478|GO:0006556
Gso3g1550 390 Gene3D - 117 381 - -
Gso3g1550 390 TIGRFAM metK: methionine adenosyltransferase 5 386 IPR002133 GO:0004478|GO:0005524|GO:0006556
Gso3g1550 390 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478|GO:0006556
Gso3g1550 390 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478|GO:0006556
Gso3g1550 390 PIRSF MAT 1 389 IPR002133 GO:0004478|GO:0005524|GO:0006556
Gso3g1550 390 Gene3D - 4 242 - -
Gso3g1550 390 Pfam S-adenosylmethionine synthetase, C-terminal domain 240 381 IPR022630 GO:0004478|GO:0006556
Gso3g1550 390 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 2 1 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1550 Gso-Chr3 41427073 41429799 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1550 K00789 - gmx:100794248 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1550 3 41427073 41429799 Gso3g1550 3 41427073 41429799 ECH
Gso3g1550 3 41427073 41429799 Gso10g0650 10 7900581 7902266 PCT