LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1545	ATGGGAGAGAAAAAAGAAGCGGCGAAGAATGAGGGCGATAAGAAGCCTGAATCAGGAGCAAAGCAAAACGACGGACGCCTACCTGTCGTTTTGAAACTCGACATGCATTGCGAGGGATGTGTCAAGAAGATCAAACGCGCCGTTCGCCATTTCGACGGTGTGGAAGACGTTAAGACCGATCTATCAAGTAAGAAACTAACGGTTATTGGAAAAGTCGACCCTGCCAAAGTGCGAGATAAACTAGCGGAGAAAACTAAGAAGAAGGTCGAACTCATTTCTCCTCAGCCTAAGAAGGATTCCGCCGGGGATAAACCGCCGGAAGAGAAAAAATCCGAAGAGAAGAAACCGGAAGATAAAAAGGCAGAAGAAAAAACTCCGAAAGAGAGCACGGTGGTGTTGAAGATCAGACTGCACTGTGAAGGTTGCATTCAGAAGATTCGAAAGATTATCCTCAAAACCAAAGGAGTTGAGTCGGTGAACATTGAAGGAGGAAAGGATTTGGTGAGCGTAAAGGGGACGATGGACGTGAAAGAAATAGTACCGTATTTGAACGAGAAGCTGAAGCGAAACGTTGAAGTGGTCCCACCCAAAAAAGAGGGTGGTGATAAGAAAGAGAACAACAAGAAGGAAGGTGGTGGTGGTGGTGGTGCTGAAGGTGCAGCGAAGGTGGAGGTGAACAAAATGGAGCACTACGGGTACGCGTACCCAGCTCCCCATATGTACTGGCACGGTCACGGTGGATACGCACCTGGTGAAAGTAGTAGTAGTAGCAGCAGCAGCAACAACAGCTATGAGGTAGAGGTTCAATCAGGGTATTCGTATTCGAATCAAGGTTATGATGGTAATTACGTGAATTACCCTTACCAGCATGGGTATAATGATAATTACATGGCAATGGCACAACCACCACCCCCGTTCTACTTGAACCCTCACCATCCTCCTCCACAGATGTTCAGCGATGAGAATCCGAATGCGTGTTCCGTGATGTGA	990	0.4727	MGEKKEAAKNEGDKKPESGAKQNDGRLPVVLKLDMHCEGCVKKIKRAVRHFDGVEDVKTDLSSKKLTVIGKVDPAKVRDKLAEKTKKKVELISPQPKKDSAGDKPPEEKKSEEKKPEDKKAEEKTPKESTVVLKIRLHCEGCIQKIRKIILKTKGVESVNIEGGKDLVSVKGTMDVKEIVPYLNEKLKRNVEVVPPKKEGGDKKENNKKEGGGGGGAEGAAKVEVNKMEHYGYAYPAPHMYWHGHGGYAPGESSSSSSSSNNSYEVEVQSGYSYSNQGYDGNYVNYPYQHGYNDNYMAMAQPPPPFYLNPHHPPPQMFSDENPNACSVM*	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1545	329	MobiDBLite	consensus disorder prediction	310	329	-	-
	Gso3g1545	329	MobiDBLite	consensus disorder prediction	193	219	-	-
	Gso3g1545	329	SUPERFAMILY	HMA, heavy metal-associated domain	130	190	IPR036163	GO:0046872
	Gso3g1545	329	Gene3D	-	127	199	-	-
	Gso3g1545	329	CDD	HMA	137	180	IPR006121	GO:0046872
	Gso3g1545	329	MobiDBLite	consensus disorder prediction	193	211	-	-
	Gso3g1545	329	PANTHER	HEAVY METAL-ASSOCIATED DOMAIN PROTEIN	1	329	-	-
	Gso3g1545	329	MobiDBLite	consensus disorder prediction	1	28	-	-
	Gso3g1545	329	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6	1	329	IPR044594	GO:0046872
	Gso3g1545	329	ProSiteProfiles	Heavy-metal-associated domain profile.	35	83	IPR006121	GO:0046872
	Gso3g1545	329	MobiDBLite	consensus disorder prediction	100	127	-	-
	Gso3g1545	329	Pfam	Heavy-metal-associated domain	33	87	IPR006121	GO:0046872
	Gso3g1545	329	Pfam	Heavy-metal-associated domain	134	192	IPR006121	GO:0046872
	Gso3g1545	329	CDD	HMA	35	90	IPR006121	GO:0046872
	Gso3g1545	329	SUPERFAMILY	HMA, heavy metal-associated domain	30	91	IPR036163	GO:0046872
	Gso3g1545	329	MobiDBLite	consensus disorder prediction	1	21	-	-
	Gso3g1545	329	MobiDBLite	consensus disorder prediction	83	127	-	-
	Gso3g1545	329	Gene3D	-	24	90	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1545	Gso-Chr3	41351231	41353227	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1545	-		-	gmx:100792662	575.474

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso3g1545	3	41351231	41353227	Gso3g1545	3	41351231	41353227	ECH
	Gso19g1527	19	44164120	44166116	Gso3g1545	3	41351231	41353227	GST