Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1538 ATGTTTTCTTCGTCTCCACCGTTTCCTTCTTCTTCTTCGCCTTCAGTTACGATGCTTCATGAACAAGCTGCTCCTGCAGTTGCATCCTGGTCTTCTAGTTCTGCAGCTCAGCATTTTCCTACCTCAGTTCTTTTACAAGAGCAGCGTGATGAGTATAAGCCCTTACTGCACGTGCATAATAAGGAGACAACACTAAATACAAGGCAGATGGATATGACCTCAGTTCATGAAAAAGGTAACATGAGCAATGGTGATCAGTTAGTGCATGACTTTGTGCAGCAGTTGCATCTCCGGTCTCATTTACAGAACTTATTGACTTGTTCTCCGACAAGGGGAATTGCTGCTTCTTCGATTCTGCAACCTGTTGATATTGATTCTGAGTGGCCTGCAGATGGTCTGCCAGGGAATGCCATTTCTCTTGCACAGCAAGCTTTGTCTGCCTCAAAGCAAGCAGTTTCAACAACTGGAGAGATGAAATTGATTGAAATCGATGATGATGATCCACTTCCTTTTGGTCTGGCCTCCACAAGTTTGGCTAACTCTTCACTAAAAAAGAATAAAGTTGTGAGGTCGACACGGATTATAGAAAGAAGGTCTAAACAGAGAAAATCATCGAAGTCAAAAATTATTGACGAAGAAAGTTACCTTGAAAGAAAGTCTGATGTACAGAGAAGGTTACGTTTAGAGAAGAAGTTAAAAGAAGGGTATGATCAAAATGACCCCCTGCGCTTGTTCCTGTCGGGTCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCACTATTGATTACTCAGTTACAGGATTTATCAAGATTCGAAGAAGTAAAGATCAGGCTTCAATCTCAGTTAAGGCGGGAACCAACTTTGGCTGAATGGGCTGATGCTGTGGGCCTTAGTTGTTATACCCTGCAGACACAGCTTCATTGTGCTAACAGAAGCAAAGAAAAGCTGTTTCATGCCAATTTACGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGTACTGGTCTTATGAAGAGCATCCAAAAGTTTAAACCTGAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGGCATGCAATAAGGAAGGCTATATTTCTACATTCCAGGACAATCCGTTTGCCGGAGAATTTATATACCCTTTTGGGCAAGCTCATAGAAGCAAAGAAATCATACATTCAGGAAGGAAATCTTCACCCCACCAAAGAAGAATTAGCAAGAAGGGTAGGAATTACAGTAGAAAAGTTGGACAATTTGCTATTTGCTTCAAGAAATCCAATTTCGATGCAGCAAACTTTGTGGGTGGACCAAGATACAACTTTCCAGGAGATTACTGCAGACTCAGCAATTGAGATCCCAGGTGTGACTGTCTCAAAACAGCTAATGAGGAGGCACGTGCACAACCTCCTAAATATCTTAAGCCCAAAAGAAAAGGGCATAATCAGGCTAAGATTTGGTATTGAGGATGGCAAGGAGAAAACATTGTCAGATATTGGCAAGGTGTTTGGTTTGACCAAGGAGAGAGTCCGACAGTTGGAGTGCCGAGCATTGTCGAAGCTCAAGCAGTGTCTCGAAAGTCAAGGACTTGATGCATACATAGACTTGCTTGTATAG 1665 0.4258 MFSSSPPFPSSSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPLLHVHNKETTLNTRQMDMTSVHEKGNMSNGDQLVHDFVQQLHLRSHLQNLLTCSPTRGIAASSILQPVDIDSEWPADGLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDDDPLPFGLASTSLANSSLKKNKVVRSTRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRLRLEKKLKEGYDQNDPLRLFLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLSCYTLQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIQKFKPEAGCRFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQEGNLHPTKEELARRVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGVTVSKQLMRRHVHNLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLECRALSKLKQCLESQGLDAYIDLLV* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1538 554 Pfam Sigma-70 region 3 399 468 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gso3g1538 554 CDD Sigma70_r4 480 538 - -
Gso3g1538 554 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 8 554 - -
Gso3g1538 554 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 8 554 - -
Gso3g1538 554 Gene3D - 473 553 IPR036388 -
Gso3g1538 554 PRINTS Major sigma-70 factor signature 342 355 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso3g1538 554 PRINTS Major sigma-70 factor signature 366 374 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso3g1538 554 PRINTS Major sigma-70 factor signature 490 502 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso3g1538 554 PRINTS Major sigma-70 factor signature 511 526 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso3g1538 554 PRINTS Major sigma-70 factor signature 526 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso3g1538 554 Pfam Sigma-70 region 2 318 382 IPR007627 GO:0003700|GO:0006352|GO:0006355
Gso3g1538 554 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 238 388 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gso3g1538 554 ProSitePatterns Sigma-70 factors family signature 2. 511 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso3g1538 554 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 452 550 IPR013324 -
Gso3g1538 554 Gene3D - 235 387 - -
Gso3g1538 554 Gene3D - 391 468 IPR036388 -
Gso3g1538 554 Pfam Sigma-70, region 4 486 539 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gso3g1538 554 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 391 464 IPR013324 -
Gso3g1538 554 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 316 541 IPR014284 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1538 Gso-Chr3 41286127 41291416 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1538 - - gmx:100815699 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1538 3 41286127 41291416 Gso3g1538 3 41286127 41291416 ECH
Gso19g1521 19 44087279 44092367 Gso3g1538 3 41286127 41291416 GST
Gso3g1538 3 41286127 41291416 Gso10g0492 10 5353846 5359306 PCT
Gso10g0492 10 5353846 5359306 Gso3g1538 3 41286127 41291416 PCT