Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0492 ATGGAATTCGCCAGGACCATGTTCTGTTCTTCTCCACCGTTCCCTCCAAGAACTCATCACCCTTGGAGCACTCTCCCCTCGTCCTCTTCTACTTCTTCCGTTTTGATGCTTCACGAACAAGCTTCCCCTACAGTTGCCTCTTGGTCTTCTAATTTTTCAGCACAGAATTTTCCTGCCTCAGTTCTTTTACCAGAGCAGCGTGATGAATATAGGCCTCTTCTGCACATGTCTAAGGAAGACAAGACATCACAGGCAATGTTAAGTACAAGGCAGATGGATACAGTCACGGTTCATGAAGAGAATAACACGGAAAATGCTGATCAGGTAGTGCTTGACTTTAGGAAGCACCTGCATCACTGGCCTAATTTACAGTACTTATTAACTTCCTCACAAATAGGGGAAGTTGCTGCTTCTTCAACTTTAGAGCATGTTTCTGTTGACTTGGAGAGGCGTCCAAATGGTGTGCAATTTAATGGAGTTTCTCTTGCTAAGAAAGCTTTGTCTACCTCGAAACAAGAATCCTCAGTAGTTGAAGACTTGAAATCAATTAAAGCTGATGATGATTCAATTCCTTTTGGTCTGGCCTCTACTAGCTTGGCTGATCCTTCAATTGGAAGAAATAAAACTGTGAGGTCAACACGGCTTCTAGAGAGACGATCAAAACAAAGAAAAGTGCCTAAGTCGAAAGTTATAGACGATGAAACCTACCTTGCAAGAAAGGATGATGCACAAGAAAAGCTACGTGCAGAAAAGAAGAAAAATGAAGAACTTGATCAAGATGATCCCCTGCGCTTGTTCTTGTGGGGTCCCGAAACAAAACAACTTTTGACACTTGAACAAGAATCTCAACTGATATCTCAGATACAGGACTTATTGAGATTGGAAGAAGTGAAGACCAATCTTCAATCTCAATTTGGAAGGGAACCAACTATGGCTGAATGGGCAGAGGGTGCAGGACTTAATTGTCGATTGCTGCAATCACAGCTTCATTCTGGCAACAGAAGCAGAGAAAAGCTTATTCAAGCAAATTTACGCATGGTAGTCCATGTTGCCAAAAGTTATCAGGGGCGTGGTCTCAGCCTTCAGGACTTACTACAGGAGGGAAGTATGGGTCTTATGAAGAGTGTTGAAAAATTCAATCCCCTAGCCGGTAGTCGATTTGGTAATTATGCATTCTGGTGGATAAGGCAAGCAATAAGGAAGGCAGTGTTTCGACATTCCAGGACAATCCGTCTACCGGAGAAGGTATTTATCCTATTGGGCAAGGTAATGGAGGCTAAGAAATTGTACATTCAGGAAGGAAACCTTCACCCAACTAAAGAAGAATTAGCAAGAAGGGTAGGAGTTACTGTAGAAAAGATTGACAAATTACTATTTTCTGCAAGAATTCCAATTTCAATGCAGCAAACTGTGTGGGCTGACCAAAATACAACTTTCCAGGAGATTACTGCAGACCCCACTGTTGAGGCCACAGATGTGACTGTCGAAAAACAGCTTATGAGAAGGCATGTTCTCAATGTCCTAAGTGTCTTACACCCAAAAGAGAGGAGAATTATCCGGTTAAGATATGGTTTTGAGGATGGTGAACAGAAATCTTTATCAGAGATTGGAGACATATTTGGTTTGTCTAAGGAAAGGGTTCGTCAATTGGAGATCCGAGCACTATACAAGCTGAAGAAGTGCCTTGTCAAACAAGGACTTGATGCTTATGTAGACTTGCTTCTATAG 1728 0.4213 MEFARTMFCSSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHHWPNLQYLLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVEDLKSIKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0492 575 Pfam Sigma-70, region 4 507 560 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 PRINTS Major sigma-70 factor signature 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 PRINTS Major sigma-70 factor signature 387 395 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 PRINTS Major sigma-70 factor signature 511 523 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 PRINTS Major sigma-70 factor signature 532 547 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 PRINTS Major sigma-70 factor signature 547 558 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 Pfam Sigma-70 region 3 420 488 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 472 571 IPR013324 -
Gso10g0492 575 Gene3D - 412 489 IPR036388 -
Gso10g0492 575 ProSitePatterns Sigma-70 factors family signature 1. 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 Pfam Sigma-70 region 2 339 408 IPR007627 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 CDD Sigma70_r4 501 559 - -
Gso10g0492 575 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 259 409 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 Coils Coil 240 260 - -
Gso10g0492 575 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 412 485 IPR013324 -
Gso10g0492 575 Gene3D - 256 408 - -
Gso10g0492 575 Gene3D - 494 574 IPR036388 -
Gso10g0492 575 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 335 562 IPR014284 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 PIRSF Sigma_factor_SigC 1 575 IPR016262 -
Gso10g0492 575 ProSitePatterns Sigma-70 factors family signature 2. 532 558 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso10g0492 575 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 575 - -
Gso10g0492 575 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0492 Gso-Chr10 5353846 5359306 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0492 - - gmx:100778636 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1521 19 44087279 44092367 Gso10g0492 10 5353846 5359306 PCT
Gso3g1538 3 41286127 41291416 Gso10g0492 10 5353846 5359306 PCT
Gso10g0492 10 5353846 5359306 Gso19g1521 19 44087279 44092367 PCT
Gso10g0492 10 5353846 5359306 Gso3g1538 3 41286127 41291416 PCT