Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1518 ATGATGAACACAGCCAACGGCACGATGATCTCACCGTCGTCTTCGTCGGGAACGGCGGCGCAGTCGCCGGGACTGAAGACCTATTTCAAAACCCCCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCTTCGTCATCGTCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCGGCGGCAGCTCGATTGCTGGGAGGAAGCAACGGTAGCCGGGCACTTAGTTTTGTTGGAGGCAATGGTGGCAGCAAGAGTAATGGAGGAAATACTAGGATTAGTTCCATTGGTGCTTCGAGTACAAGTAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACATACTTGATATTCAATGTCGGGGATGCAATTTTCATTAGTGATTTGAATTCGCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCAAATCCTGTGTGCCACACGTTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGCGATGTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTCTGTCAATAACAGTCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAGAACAAAGATGGTGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAATTTTCGGTTGCGCATGCACGTTACAGTAAGAGTAATCCTATAGCCAGATGGCATATATGCCAGGGTTCAATTAATAGTATTTCTTTCTCAATGGATGGGGCATACTTAGCAACTGTTGGACGAGATGGTTACTTGCGAGTGTTTGATTACTCAAAAGAGCAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCATGGAGCATGGATGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGCGAGGGACATAACTCATGGGTCAGTGGAGTTGCTTTCGATTCATATTGGACATCACCAAATTCAAATGACAATGGAGAGACTGTTACATATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTGTGGGACCTGGAAATGGACGAGATTGTAGTGCCCTTGAGGCGGCCACCTGGTGGATCCCCGACTTACAGTACTGGAAGCCAGTCATCGCACTGGGACAATGTTGTCCCATTGGGTACCCTGCAACCTGCTCCGAGTATGCGGGATGTTCCAAAAATCTCTCCGTTGGTTGCTCACCGTGTGCATACCGAACCACTCTCTGGCTTGATATTTACCCAGGAATCTGTGCTCACTGCCTGCCGGGAGGGGCACATTAAAATTTGGATGAGGCCAGGGGTTGCTGAGAGCCAATCAAGCAACTCTGAAAACTTGTTAGCTACCAGCCTCAAGGAGAAACCTTCACTTTCAAGCAAGATCAGCAGCAATTCTAGCTACAAGCAATGA 1653 0.4664 MMNTANGTMISPSSSSGTAAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNTRISSIGASSTSSAMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHTFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCIAWVPGGDGSFVVSHTDGNLYVYEKNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWTSPNSNDNGETVTYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPGVAESQSSNSENLLATSLKEKPSLSSKISSNSSYKQ* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1518 550 Pfam WD domain, G-beta repeat 301 329 IPR001680 GO:0005515
Gso3g1518 550 Pfam WD domain, G-beta repeat 346 371 IPR001680 GO:0005515
Gso3g1518 550 MobiDBLite consensus disorder prediction 109 134 - -
Gso3g1518 550 MobiDBLite consensus disorder prediction 1 25 - -
Gso3g1518 550 MobiDBLite consensus disorder prediction 521 550 - -
Gso3g1518 550 MobiDBLite consensus disorder prediction 1 26 - -
Gso3g1518 550 SUPERFAMILY WD40 repeat-like 152 511 IPR036322 GO:0005515
Gso3g1518 550 PANTHER WD REPEAT PROTEIN 3 546 - -
Gso3g1518 550 SMART WD40_4 332 371 IPR001680 GO:0005515
Gso3g1518 550 SMART WD40_4 374 426 IPR001680 GO:0005515
Gso3g1518 550 SMART WD40_4 215 261 IPR001680 GO:0005515
Gso3g1518 550 SMART WD40_4 475 512 IPR001680 GO:0005515
Gso3g1518 550 SMART WD40_4 290 329 IPR001680 GO:0005515
Gso3g1518 550 Gene3D - 15 521 IPR015943 GO:0005515
Gso3g1518 550 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 546 - -
Gso3g1518 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 380 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1518 Gso-Chr3 41060236 41065728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1518 306 433 Miscellaneous Gene Families AT5G08390 22.656 3.77e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1518 K24741 - gmx:100782580 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1518 3 41060236 41065728 Gso3g1518 3 41060236 41065728 ECH
Gso19g1504 19 43869228 43875536 Gso3g1518 3 41060236 41065728 GST