Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1504 ATGATGAACACAGCTAACGGCACGATGATGTCACCGTCGTCTTCGTCGGTAACGGCGCAGTCGCCGGGACTGAAGACCTATTTCAAAACCCCCGAGGGGAGATATAAGCTTCATTACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACTGCGTCCTCGTCGTCATCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCAGCGGCAGCTAGATTGCTGGGAGGAAGCAACGGAAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTGGCAGCAAGAGTAATGGAGGAAATACTAGGATTGGTTCGATTGGTGCTTCAAGTACAAGTAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACTTACTTGATCTTCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACGCATTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGTGATGTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCCTGTCGGGGCCCTGCATTACAACAGAGATGGTTCTGTCAATAACAGTCGTTGTACTTGTATTGCTTGGGTTCCTGGAGGCGATGGTTCTTTCGTTGTTTCTCATGCTGATGGGAATTTGTACGTATATGAAAAGAACAAAGATGGCGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAGTTTTCGGTTGCCCATGCACGTTACAGTAAGAGTAATCCTATAGCGAGATGGCATATATGCCAGGGTTCAATTAATAGTATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATGGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGGGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGACGAGATTGTAGTGCCCTTGAGACGGCCACCTGGTGGATCCCCAACTTACAGTACTGGAAGTCAGTCATCGCACTGGGACAATGTTGTACCATTAGGTACCTTGCAACCTGCTCCGAGTATGCTGGATGTTCCAAAAATCTCACCGTTGGTTGCTCACCGTGTGCATACTGAACCACTCTCTGGCTTGATATTTACCCAGGAATCTGTGCTTACTGCCTGCCGGGAGGGGCATATTAAAATCTGGATGAGGCCAGGGGTTGCTGAGAGCCAATCTAGCACCTCTGAAAACTTGTTAGCTACCAATCTCAAGGAGAAGCCTTCACTTTCAAGCAAGATCAGCAGCAATTCTAGCTACAAGCAATGA 1653 0.4604 MMNTANGTMMSPSSSSVTAQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNTRIGSIGASSTSSAMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKPVGALHYNRDGSVNNSRCTCIAWVPGGDGSFVVSHADGNLYVYEKNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGAFLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMLDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPGVAESQSSTSENLLATNLKEKPSLSSKISSNSSYKQ* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1504 550 Pfam WD domain, G-beta repeat 346 371 IPR001680 GO:0005515
Gso19g1504 550 Pfam WD domain, G-beta repeat 301 329 IPR001680 GO:0005515
Gso19g1504 550 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 546 - -
Gso19g1504 550 MobiDBLite consensus disorder prediction 1 25 - -
Gso19g1504 550 Gene3D - 14 521 IPR015943 GO:0005515
Gso19g1504 550 SUPERFAMILY WD40 repeat-like 153 511 IPR036322 GO:0005515
Gso19g1504 550 MobiDBLite consensus disorder prediction 530 550 - -
Gso19g1504 550 MobiDBLite consensus disorder prediction 1 27 - -
Gso19g1504 550 PANTHER WD REPEAT PROTEIN 3 546 - -
Gso19g1504 550 MobiDBLite consensus disorder prediction 110 130 - -
Gso19g1504 550 SMART WD40_4 290 329 IPR001680 GO:0005515
Gso19g1504 550 SMART WD40_4 475 512 IPR001680 GO:0005515
Gso19g1504 550 SMART WD40_4 332 371 IPR001680 GO:0005515
Gso19g1504 550 SMART WD40_4 374 426 IPR001680 GO:0005515
Gso19g1504 550 SMART WD40_4 215 261 IPR001680 GO:0005515
Gso19g1504 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 380 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1504 Gso-Chr19 43869228 43875536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1504 306 433 Miscellaneous Gene Families AT5G08390 23.438 2.12e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1504 K24741 - gmx:100805756 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1504 19 43869228 43875536 Gso3g1518 3 41060236 41065728 GST