Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1517 ATGGCAAAGCTAATCCATTTCCTCCTTTTCCTTTTCATCCAAACAATTTCAGCCCAAACACCAGCAGCACCAGCGGGCCCCACCAACATCACCCAAGTTCTAGAGAAAGCAGGACAATTCACAACCTTCATTAAACTCCTCAAAGCTTCACAAATAGCTGATAGAATCAATTCACAGCTGAACAACTCAAACCAAGGCCTAACCGTGTTTGCACCCACTGATAATGCATTCTCAAGCCTCAAAGCAGGAACATTAAACTCCATAAACTCACAAGACCAAATGCAGCTGATACAATTCCACATTCTCCCCACTCTCTACACCATCTCACAGTTCCAAACCGCAAGTAACCCCTTGCACACGCAAGCTGGAAACAGTGATGATGGAGAGTATCCTTTAAATGTGACCACCTCAGGGAACCAAGTGAATGTAACAACTGGGGTGGTTGATACAACAGTGTCCAATACTATCTACAGTGATACTCAGCTCTCAGTGTATCAGGTGGATAAGGTGCTTCTTCCTATGAAGCTTTTCGGCGCGACGGCACCGGCTGCTGCACCGGCGGAGGCTCCTGCGCCATCCAAGCCGGAGAAAAATGTCCGGGCAGGGGCTGCTGATGCTTCATCTGGGTCATCGGGTTCATCGGTTGATGCTTCGAATGCAGTGAGTTTGAATAGAAAGACAGTTAAAGGTTTTATCATGACCGTGGCAATCATTGTTTCTTGTTTGTGGATGTAA 735 0.4667 MAKLIHFLLFLFIQTISAQTPAAPAGPTNITQVLEKAGQFTTFIKLLKASQIADRINSQLNNSNQGLTVFAPTDNAFSSLKAGTLNSINSQDQMQLIQFHILPTLYTISQFQTASNPLHTQAGNSDDGEYPLNVTTSGNQVNVTTGVVDTTVSNTIYSDTQLSVYQVDKVLLPMKLFGATAPAAAPAEAPAPSKPEKNVRAGAADASSGSSGSSVDASNAVSLNRKTVKGFIMTVAIIVSCLWM* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1517 244 SMART fasc_3 68 174 IPR000782 -
Gso3g1517 244 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11 5 238 - -
Gso3g1517 244 Gene3D FAS1 domain 13 173 IPR036378 -
Gso3g1517 244 ProSiteProfiles FAS1/BIgH3 domain profile. 27 171 IPR000782 -
Gso3g1517 244 MobiDBLite consensus disorder prediction 204 219 - -
Gso3g1517 244 MobiDBLite consensus disorder prediction 185 219 - -
Gso3g1517 244 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 238 IPR045003 -
Gso3g1517 244 SUPERFAMILY FAS1 domain 26 173 IPR036378 -
Gso3g1517 244 Pfam Fasciclin domain 39 173 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1517 Gso-Chr3 41057190 41058179 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1517 - - gmx:100784186 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1517 3 41057190 41058179 Gso3g1517 3 41057190 41058179 ECH
Gso19g1503 19 43860729 43862452 Gso3g1517 3 41057190 41058179 GST