Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1469 ATGATGAAGAAACAATTAACAGGTATACGGGGAGATTCTCCCCTGCAATCGGCAATCCGAGCTGGAAATTTAGAATTGGTTCTGGAAATCATCTCTCAGAGTCCAGAGGAAGAATTAAAGGAGTTGCTTTCAAAACAAAACAACTCTTGTGAAACTGCCTTATATGTTGCTGCTGAAAATGGTCATCTTGATATACTCAAGGAATTGATTAGATACCATGATATTGGGTTGGCCAGCTTCAAAGCTAGAAATGGATTTGATGCATTCCACATTGCTGCTAAAAATGGACACTTGGAGATATTGAAAGTCCTCATGGAGGCCTTTCCTGAAATTTCAATGACTGTTGATCTGTCGAACACTACTGTGTTGCATACTGCTGCAGCACAAGGACACATTGAGGTAGTAAATTTTCTCTTGGAAAAAGGTAATAGCCTGGTAACTATTGCAAAAAGCAATGGGAAAACTGTGTTGCATTCTTCTGCAAGAAATGGCTACATGGAGGTTGTCAAGGCCCTTGTGAGCAAAGAACCAGAAATTGCAATGAGAATTGATAAAAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTGGATGAGCTCGTGAAATTGAATCCATCTTTGGCCAATATGGTGGATGCCAAGGGGAACACTGCACTGCATATAGCAACCCGGAAGGGTCGTCTACAGGTTGTTCAGAAGTTACTAGATTGCAGAGAAATAAACACAGATGTTATCAACAAATCTGGAGAAACTGCTTTAGATACTGCAGAGAAAAATGGTCGTTTGGAAATTGCCAACTTTCTGCAACATCATGGAGCTCAAAGTGCCAAGTCCATCAAGTCACCTACTACAAACATGGCCCTTGAGCTCAAACAAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACAATTAAAACGCAAAGACGTATGCAAGGTATAGCGAAGCGAATCAACAAAATGCACACTGAGGGGCTTAACAATGCGATCAACTCCAACATTGTTGTTGCTGTCCTTATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGAAACCAAGTGAACTCTCTCCTGGAATGTCTCCTGGGGAAGCATATATTGCTCCGGATATTGGATTCATGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAATAAGTTGATGTGGGTTGCATGTGTGCTGATTTCTGTGGCATTTATTGCAATGTCATACATAATTGTTGGGGATCATAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGAACACTGATTATGGCAGCTACTTTAGGAACACTCTGTTATTGGGTGATTGCTCATCGCCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATGTCTATGTCAATGATGTCAGGATCAGAGAATGAGTATAAGACAGTGTATGCAATATAA 1566 0.4132 MMKKQLTGIRGDSPLQSAIRAGNLELVLEIISQSPEEELKELLSKQNNSCETALYVAAENGHLDILKELIRYHDIGLASFKARNGFDAFHIAAKNGHLEILKVLMEAFPEISMTVDLSNTTVLHTAAAQGHIEVVNFLLEKGNSLVTIAKSNGKTVLHSSARNGYMEVVKALVSKEPEIAMRIDKKGQTALHMAVKGQNLELVDELVKLNPSLANMVDAKGNTALHIATRKGRLQVVQKLLDCREINTDVINKSGETALDTAEKNGRLEIANFLQHHGAQSAKSIKSPTTNMALELKQTVSDIKSGVHNQLEHTIKTQRRMQGIAKRINKMHTEGLNNAINSNIVVAVLIATVAFAAIFNVPGQYPEKPSELSPGMSPGEAYIAPDIGFMIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSYIIVGDHKELAIAATALGTLIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSMSMSMMSGSENEYKTVYAI* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1469 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Gso3g1469 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Gso3g1469 521 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Gso3g1469 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Gso3g1469 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Gso3g1469 521 SMART ANK_2a 254 283 IPR002110 GO:0005515
Gso3g1469 521 SMART ANK_2a 10 41 IPR002110 GO:0005515
Gso3g1469 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Gso3g1469 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Gso3g1469 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Gso3g1469 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Gso3g1469 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Gso3g1469 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Gso3g1469 521 ProSiteProfiles Ankyrin repeat profile. 186 208 IPR002110 GO:0005515
Gso3g1469 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 521 - -
Gso3g1469 521 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 521 - -
Gso3g1469 521 Pfam Ankyrin repeats (3 copies) 150 208 IPR002110 GO:0005515
Gso3g1469 521 Pfam Ankyrin repeats (3 copies) 10 75 IPR002110 GO:0005515
Gso3g1469 521 Pfam Ankyrin repeats (3 copies) 217 280 IPR002110 GO:0005515
Gso3g1469 521 Pfam Ankyrin repeats (3 copies) 81 143 IPR002110 GO:0005515
Gso3g1469 521 Gene3D - 111 283 IPR036770 -
Gso3g1469 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Gso3g1469 521 Gene3D - 5 110 IPR036770 -
Gso3g1469 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Gso3g1469 521 Pfam Domain of unknown function 334 449 IPR026961 -
Gso3g1469 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 208 - -
Gso3g1469 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Gso3g1469 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1469 Gso-Chr3 40677725 40681509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1469 2 521 Miscellaneous Gene Families AT1G07710 63.688 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1469 - - gmx:100802370 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1457 19 43449088 43452874 Gso3g1469 3 40677725 40681509 GST