Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1457 ATGATGAAGAAACAATTGACAGGCATACGGGGTGATTCTCCCCTACAATCGGCAATCCGAGTTGGAAATTTAGAATTGGTTCTGGAAATCATCTCTCAGAGTCCAGAGGACGAATTAAAGGAGTTGCTTTCAAAACAAAACAACTCTTTTGAAACTGCCTTATATGTTGCTGCTGAAAATGGTCATCTTGATATACTGAAGGAATTGATTAGATACCATGATATTGGGTTGGCCAGCTTCAAAGCTAGAAATGGATTCGATCCATTCCATATTGCTGCTAAAAATGGACACTTGGAGATAGTGAAGGTCCTCATGGAGGCCTTTCCTGAAATTTCAATGACTGTTGATCTGTCGAACACTACTGGGTTGCATACTGCTGCAGCACAAGGACACATTGAGGTAGTAAATTTTCTCTTGGAAAAAGGTAGTAGCCTGATAACTATTGCTAAAAGCAATGGGAAAACTGTATTGCATTCTGCTGCAAGAAATGGCTACGTGGAGGTCGTCAAGGCCCTTCTGAGCAAAGAACCTGAAATTGCAATGAGAATTGATAAGAAGGGGCAGACAGCACTCCATATGGCGGTTAAAGGACAGAATCTTGAGTTGGTGGATGAACTCGTGAAACTGAATCCATCTTTGGCAAATATGGTGGATGCCAAGGGAAACACTGCACTGCATATAGCAACCCGGAAAGGTCGTCTACAGGTTGTTCAGAAGTTACTAGATTGCAGAGAAATAGACACAGATGTTATTAACAAATCTGGAGAAACTGCTTTGGATACTGCTGAGAAAAATGGTCGCCTGGAAATTGCCAACTTTCTGCAACATCGTGGAGCTCAAAGTGCCAAGTCCATCAAGTCACCGACTACAAACACGGCCCTTGAGCTCAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAACTGGAACACACAATTAAAACACAAAGACGTATGCAAGGTATAGCGAAGCGAATCAACAAAATGCACACCGAGGGGCTTAACAATGCGATCAACTCCAACACTGTAGTTGCTGTCCTTATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGAAACAAAATGAACTCTCTCCTGGAATGTCTCCTGGGGAAGCATATATTGCTCCGGATATCGGATTCAAGATATTCATAATCTTTGATTCTACTGCTCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAATAAGTTGATGTGGGTAGCATGTGTGCTGATTTCTGTGGCATTTATTGCAATGTCATACATAATTGTTGGGGATCATAAAGAGTTGGCTATAGCAGCCACAGTTCTAGGAACAGTGATTATGGCAGCTACGTTGGGAACACTCTGTTATTGGGTGATTACTCACCACCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATGTCTATGTCAATGATGTCAGGATCGGAGAATGAGTATAAGACAGTGTATGCAATCTAA 1566 0.4202 MMKKQLTGIRGDSPLQSAIRVGNLELVLEIISQSPEDELKELLSKQNNSFETALYVAAENGHLDILKELIRYHDIGLASFKARNGFDPFHIAAKNGHLEIVKVLMEAFPEISMTVDLSNTTGLHTAAAQGHIEVVNFLLEKGSSLITIAKSNGKTVLHSAARNGYVEVVKALLSKEPEIAMRIDKKGQTALHMAVKGQNLELVDELVKLNPSLANMVDAKGNTALHIATRKGRLQVVQKLLDCREIDTDVINKSGETALDTAEKNGRLEIANFLQHRGAQSAKSIKSPTTNTALELKRTVSDIKSGVHNQLEHTIKTQRRMQGIAKRINKMHTEGLNNAINSNTVVAVLIATVAFAAIFNVPGQYPEKQNELSPGMSPGEAYIAPDIGFKIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSYIIVGDHKELAIAATVLGTVIMAATLGTLCYWVITHHLEASRLRSLRTTMSSRQSMSMSMMSGSENEYKTVYAI* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1457 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Gso19g1457 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Gso19g1457 521 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Gso19g1457 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Gso19g1457 521 Pfam Ankyrin repeats (3 copies) 39 108 IPR002110 GO:0005515
Gso19g1457 521 Pfam Ankyrin repeats (3 copies) 123 208 IPR002110 GO:0005515
Gso19g1457 521 SMART ANK_2a 10 39 IPR002110 GO:0005515
Gso19g1457 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Gso19g1457 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Gso19g1457 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Gso19g1457 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Gso19g1457 521 SMART ANK_2a 254 283 IPR002110 GO:0005515
Gso19g1457 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Gso19g1457 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Gso19g1457 521 ProSiteProfiles Ankyrin repeat profile. 186 208 IPR002110 GO:0005515
Gso19g1457 521 Gene3D - 147 321 IPR036770 -
Gso19g1457 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Gso19g1457 521 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 521 - -
Gso19g1457 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Gso19g1457 521 Gene3D - 1 146 IPR036770 -
Gso19g1457 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Gso19g1457 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Gso19g1457 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Gso19g1457 521 Pfam Ankyrin repeats (many copies) 216 262 IPR002110 GO:0005515
Gso19g1457 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 208 - -
Gso19g1457 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 521 - -
Gso19g1457 521 Pfam Domain of unknown function 334 449 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1457 Gso-Chr19 43449088 43452874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1457 2 521 Miscellaneous Gene Families AT1G07710 63.688 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1457 - - gmx:100787392 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1457 19 43449088 43452874 Gso3g1469 3 40677725 40681509 GST