Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1468 ATGGATCATCATCGTCACCCTCATCACACCACCCCTCTCTCCGAGCCCACCACCCCCACCACCCCTCGCCCCACCCTCTTCCTCTCCACCTCCGGCAAGGCCCTCCTCCTCTCCAACTCCAACAAATCCCTCCTCCTCTCCAACTCCAGCAAACGCCTCGACACCCCGAGGAAAAAATATGTCAAGCAAGTCACCGGCCGCCATAACGACACCGAGCTGCACCTCGCCGCGCAGCGCGGCGACGCGGCCTCCGTCCGCCAGATCCTCGCCGAGATCGACTCCATCATGATGGGGAGCTTCGAGTTCGACGCCGAGGTTGCCAGTGTCAGGTCCGCCATCTTTAATGAGGTGAATGAGCTGGGAGAAACCGCCCTCTTCACCGCAGCTGAAAAGGGCCACCTCGACGTCGTAAAGGAGCTCCTCCCTCACACCAGCCACGACGCGCTTTCCTCTAAAAACCGCTCCGGCTTTGACACCTTGCACATTGCCGCTAGCAAAGGTCATCTTGCCATTGTGCAGGCGCTACTAGACCATGATCCCGGTTTGATTAAGACGTTTGCGCAGTCAAATGCAACTCCTCTAATCTCTGCGGCTACACGAGGGCATGCAGATGTCGTTGAAGAGTTGTTGTCTAGGGATCCTACTCAGTTGGAGATGACTAGGTCCAACGGGAAAAATGCGCTACATTTAGCTGCACGCCAGGGACATGTGAGTGTTGTAAAGATACTACTACGGAAGGATCAACAACTTGCTCGAAGGACTGATAAGAAAGGACAAACTGCGCTACACATGGCTGTCAAAGGGGTTAGTTGTGAAGTGGTGAAGCTGATTCTTGCTGCGGATGCAGCCATTGTCATGCTTCCTGACAAATTTGGCAATACTGCGTTGCATGTAGCCACAAGGAAAAAGAGGACAGAGATAGTGCATGAGCTGTTACTTCTACCTGACACCAATGTAAATACCTTGACAAGAGACCACAAGACAGCTCTTGACTTGGCGGAGGGGCTTCCAATATCAGAGGAAATTCTGGAGATCAAAGAGTGTCTCATTCGTTATGGTGCAGTTAAAGCCAATGATCTCAACCAACCAAGGGACGAGCTAAGGAAAACCATGACACAAATCAAGAAAGATGTGTATTTTCAACTGGAACAAGCTCGAAAAACAAACAAGAACGTGAGTGGGATTGCCAATGAGCTACGAAAGCTGCACAGAGCTGGAATCAACAATGCTGCAAACTCAGTAACGGTGGTTGCTGTGCTATTTGCAGCGGTTGCATTTGCAGCAATGTTCACAGTTCCTGGTGGGGACAATGATCAAGGGGTGGCAGTGATGGCACACACTGCGTCTTTCAAGGCCTTCTTCATATCCAATGCAATAGCACTCTTTACATCATTAAGTGTGGTGGTGGTTCAAATCACGATTGTTAGAGGGGAGATAAAGGCTGAAAGAAGGGTTGTGGAGGTGATCAACAAGATGATGTGGTTAGCCTCTGTCTGCACCTCTGTTTCGTTCATTACAGCATCTTATATAGTAGTTGGTCGACGCAGCCAATGGGCTGCAATACTTGTTACCATTGTAGGAGCCGTCGTAATGGGTGGTGTTCTTGGTACCATGACATACTATGTGGTGAAATCCAAACGCTCCCGAAGGATGAGGAAGTTCTCTAAGACAGGAACACAATTGTGTCGCCTTTCAAATTCGGATGATTCGGAAATAAATCCAATCTATGCCATTTGA 1737 0.4997 MDHHRHPHHTTPLSEPTTPTTPRPTLFLSTSGKALLLSNSNKSLLLSNSSKRLDTPRKKYVKQVTGRHNDTELHLAAQRGDAASVRQILAEIDSIMMGSFEFDAEVASVRSAIFNEVNELGETALFTAAEKGHLDVVKELLPHTSHDALSSKNRSGFDTLHIAASKGHLAIVQALLDHDPGLIKTFAQSNATPLISAATRGHADVVEELLSRDPTQLEMTRSNGKNALHLAARQGHVSVVKILLRKDQQLARRTDKKGQTALHMAVKGVSCEVVKLILAADAAIVMLPDKFGNTALHVATRKKRTEIVHELLLLPDTNVNTLTRDHKTALDLAEGLPISEEILEIKECLIRYGAVKANDLNQPRDELRKTMTQIKKDVYFQLEQARKTNKNVSGIANELRKLHRAGINNAANSVTVVAVLFAAVAFAAMFTVPGGDNDQGVAVMAHTASFKAFFISNAIALFTSLSVVVVQITIVRGEIKAERRVVEVINKMMWLASVCTSVSFITASYIVVGRRSQWAAILVTIVGAVVMGGVLGTMTYYVVKSKRSRRMRKFSKTGTQLCRLSNSDDSEINPIYAI* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1468 578 PANTHER CASKIN 36 569 - -
Gso3g1468 578 MobiDBLite consensus disorder prediction 1 25 - -
Gso3g1468 578 SUPERFAMILY Ankyrin repeat 73 353 IPR036770 -
Gso3g1468 578 ProSiteProfiles Ankyrin repeat region circular profile. 155 178 - -
Gso3g1468 578 ProSiteProfiles Ankyrin repeat profile. 291 324 IPR002110 GO:0005515
Gso3g1468 578 ProSiteProfiles Ankyrin repeat region circular profile. 257 284 - -
Gso3g1468 578 ProSiteProfiles Ankyrin repeat profile. 257 289 IPR002110 GO:0005515
Gso3g1468 578 Pfam Ankyrin repeat 292 320 IPR002110 GO:0005515
Gso3g1468 578 Gene3D - 283 388 IPR036770 -
Gso3g1468 578 Pfam Ankyrin repeats (3 copies) 73 178 IPR002110 GO:0005515
Gso3g1468 578 Pfam Ankyrin repeats (3 copies) 220 281 IPR002110 GO:0005515
Gso3g1468 578 ProSiteProfiles Ankyrin repeat profile. 155 178 IPR002110 GO:0005515
Gso3g1468 578 Gene3D - 183 282 IPR036770 -
Gso3g1468 578 Gene3D - 34 182 IPR036770 -
Gso3g1468 578 Pfam Domain of unknown function 407 511 IPR026961 -
Gso3g1468 578 ProSiteProfiles Ankyrin repeat profile. 223 255 IPR002110 GO:0005515
Gso3g1468 578 ProSiteProfiles Ankyrin repeat region circular profile. 223 246 - -
Gso3g1468 578 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 36 569 - -
Gso3g1468 578 SMART ANK_2a 291 321 IPR002110 GO:0005515
Gso3g1468 578 SMART ANK_2a 223 252 IPR002110 GO:0005515
Gso3g1468 578 SMART ANK_2a 120 150 IPR002110 GO:0005515
Gso3g1468 578 SMART ANK_2a 68 97 IPR002110 GO:0005515
Gso3g1468 578 SMART ANK_2a 155 184 IPR002110 GO:0005515
Gso3g1468 578 SMART ANK_2a 257 286 IPR002110 GO:0005515
Gso3g1468 578 SMART ANK_2a 189 218 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1468 Gso-Chr3 40671359 40674492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1468 14 578 Miscellaneous Gene Families AT3G09550 70.698 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1468 - - gmx:100801840 1024.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1456 19 43443268 43446755 Gso3g1468 3 40671359 40674492 GST