Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1456 ATGGATCATAACCACCATCATCGTCATCACAATCACAATCATGCTCTTCACACCACCCCTCTCTCCGAGCCCACCACCCCCACCACCCCTCGCCCCACCCTCTTCCTCTCCACCTCCGGCAAGGCCCTCCTCCTCTCCAACTCCAACAAGCGCCTCGACACCCCCAGGAAGAAATATGTCAAGCAGGTCACCGGCCGCCACAACGACACCGAGCTCCACCTCGCCTCGCAGCGCGGCGACGTGGACTCTGTCCGCCACGTCCTCGCCGAGATCGACTCCATCATGATGGGGAGCTTGGAGTTCGATGCGGAGTTGGCGGACATCAGGTCCGCCATCTTCAACGAGGTGAATGATCTGGGAGAAACCGCCCTCTTCACCGCCGCGGAAAAGGGCCACCTCGACGTCGTCCGGGAGCTCCTCCCTTACACCACCGATGATGCGCTTTCCTCCAAAAACCGCTCCGGCTTTGACACCTTGCACATCGCCGCTAGCAATGGTCATCTTGCCATTGTGCAGGCGCTACTAGACCATGACCCCGGTTTGATTAAGACGTTTGCGCAGTCAAATGCAACTCCTCTAATCTCTGCAGCTACACGAGGGCATGCAGATGTTGTTGAAGAGTTGTTGTCTCGAGATCCTACTCAGTTGGAGATGACTAGGTCCAACGGAAAAAATGCTCTCCATTTAGCTGCACGCCAGGGACATGTAAGTGTTGTAAAGATACTGCTGCGGAAGGATCCACAACTTGCTCGAAGGACTGATAAGAAAGGACAAACTGCACTACACATGGCTGTCAAAGGCGTTAGTTGTGAAGTGGTGAAGCTGATTCTTGCTGCGGATACAGCCATTGTCATGCTTCCTGACAAGTTTGGTAATACTGCATTGCATGTAGCCACAAGGAAAAAGAGGACAGAGATAGTGCATGAGCTGTTGCTTCTACCTGACACCAATGTGAATACATTGACAAGAGATCACAAGACAGCTCTTGACCTTGCGGAGGGGCTTCCGATATCTGAGGAAATTCTTGAGATCAAAGAGTGTCTGATTCGTTATGGTGCAGTTAAAGCCAATGATCTCAACCAACCAAGGGACGAGCTAAGGAAAACCATGACACAAATCAAGAAAGATGTGTATTTTCAGCTGGAACAGGCTCGAAAAACAAACAAGAACGTGAGTGGGATTGCTAATGAGCTACGCAAGCTGCACAGAGCTGGAATCAACAATGCCGCAAACTCAGTAACGGTGGTTGCTGTGTTATTTGCAGCGGTTGCATTTGCAGCAATGTTCACAGTTCCTGGTGGGGACAATGATCATGGGGTGGCAGTGATGGTACAAACTGCGTCTTTCAAGGCCTTCTTCATATCCAATGCCATTGCACTCTTCACATCATTAAGTGTGGTGGTGGTTCAAATCACAATTGTTAGAGGGGAGATAAAGGCTGAAAGAAGGGTTGTGGAGGTGATCAACAAGATGATGTGGTTAGCCTCTGTCTGCACCTCTGTTTCGTTCATTTCAGCATCTTATATAGTAGTTGGTCGACGCAGCCAGTGGGCTGCAATACTTGTTACCATTGTAGGGGCCATTGTAATGGGTGGTGTTCTTGGTACCATGACATACTATGTGGTGAAATCCAAACGCTCCCGAAGGATGAGGAGGAAGAAAGGGAAGTTCTCTAAGACAGGAACACACTCGTGGCGCCTTTCGAGTTCGGATGATTCGGAAATAAATCCAATCTATGCCATTTGA 1746 0.5011 MDHNHHHRHHNHNHALHTTPLSEPTTPTTPRPTLFLSTSGKALLLSNSNKRLDTPRKKYVKQVTGRHNDTELHLASQRGDVDSVRHVLAEIDSIMMGSLEFDAELADIRSAIFNEVNDLGETALFTAAEKGHLDVVRELLPYTTDDALSSKNRSGFDTLHIAASNGHLAIVQALLDHDPGLIKTFAQSNATPLISAATRGHADVVEELLSRDPTQLEMTRSNGKNALHLAARQGHVSVVKILLRKDPQLARRTDKKGQTALHMAVKGVSCEVVKLILAADTAIVMLPDKFGNTALHVATRKKRTEIVHELLLLPDTNVNTLTRDHKTALDLAEGLPISEEILEIKECLIRYGAVKANDLNQPRDELRKTMTQIKKDVYFQLEQARKTNKNVSGIANELRKLHRAGINNAANSVTVVAVLFAAVAFAAMFTVPGGDNDHGVAVMVQTASFKAFFISNAIALFTSLSVVVVQITIVRGEIKAERRVVEVINKMMWLASVCTSVSFISASYIVVGRRSQWAAILVTIVGAIVMGGVLGTMTYYVVKSKRSRRMRRKKGKFSKTGTHSWRLSSSDDSEINPIYAI* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1456 581 Pfam Ankyrin repeats (3 copies) 219 278 IPR002110 GO:0005515
Gso19g1456 581 Pfam Ankyrin repeats (3 copies) 72 177 IPR002110 GO:0005515
Gso19g1456 581 ProSiteProfiles Ankyrin repeat profile. 222 254 IPR002110 GO:0005515
Gso19g1456 581 MobiDBLite consensus disorder prediction 1 15 - -
Gso19g1456 581 Gene3D - 67 186 IPR036770 -
Gso19g1456 581 MobiDBLite consensus disorder prediction 1 37 - -
Gso19g1456 581 ProSiteProfiles Ankyrin repeat profile. 154 177 IPR002110 GO:0005515
Gso19g1456 581 Gene3D - 187 295 IPR036770 -
Gso19g1456 581 Pfam Ankyrin repeat 291 319 IPR002110 GO:0005515
Gso19g1456 581 ProSiteProfiles Ankyrin repeat region circular profile. 154 177 - -
Gso19g1456 581 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 35 578 - -
Gso19g1456 581 ProSiteProfiles Ankyrin repeat profile. 290 323 IPR002110 GO:0005515
Gso19g1456 581 SUPERFAMILY Ankyrin repeat 72 352 IPR036770 -
Gso19g1456 581 SMART ANK_2a 154 183 IPR002110 GO:0005515
Gso19g1456 581 SMART ANK_2a 188 217 IPR002110 GO:0005515
Gso19g1456 581 SMART ANK_2a 256 285 IPR002110 GO:0005515
Gso19g1456 581 SMART ANK_2a 222 251 IPR002110 GO:0005515
Gso19g1456 581 SMART ANK_2a 290 320 IPR002110 GO:0005515
Gso19g1456 581 SMART ANK_2a 67 96 IPR002110 GO:0005515
Gso19g1456 581 SMART ANK_2a 119 148 IPR002110 GO:0005515
Gso19g1456 581 Pfam Domain of unknown function 406 510 IPR026961 -
Gso19g1456 581 Gene3D - 296 348 IPR036770 -
Gso19g1456 581 ProSiteProfiles Ankyrin repeat region circular profile. 222 245 - -
Gso19g1456 581 MobiDBLite consensus disorder prediction 17 37 - -
Gso19g1456 581 ProSiteProfiles Ankyrin repeat profile. 119 151 IPR002110 GO:0005515
Gso19g1456 581 PANTHER CASKIN 35 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1456 Gso-Chr19 43443268 43446755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1456 22 581 Miscellaneous Gene Families AT3G09550 69.847 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1456 - - gmx:100779710 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1456 19 43443268 43446755 Gso3g1468 3 40671359 40674492 GST