Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1425 ATGGCATGCGTGCTGAAGTTGTTCGCCGTAACCAATGGCAGCGTCTTCAGCCTCCACCTCAACTCACGTCGTCGCTTCCATCGCCGTTTCAATGCCAAAATCAAAATGTCCTCCTCCGACGCCGCGCTTCCTTCTCTTCCCGATAACCGCACCGTCGTCGGGTTCGGAATGACGGCGGTGGATTTCCTGGCTACCGTGGACGGATTTCCGAAACCAGACGACAAGGTCCGAAGCGCTTCGTTGAAGGTTGAAGGAGGCGGCAATGCCGGCAACGCGCTCACCTGCGCTGCTCGGCTCGGCTTGAAGCCGAAGCTGATCTCCAAAGTTGCAGATGACTCGCACGGCTTCGCCATATTGAAGGAGTTAGAAGCCGATGGCGTCGATACTTCCTTCATCGTCGTATCCAAGGGTGGTAGTTCAACATTTTCATATGTACTAGTTGACAACCAAACAAAAACTCGCACAAGTATCTACACCCCTGGAGATCCTCCAATGATGCCAGATGACCTGTCCCAGTCAACATTATTATCTGCATTTGATGGAGCAAGATTAGTTTATTTCGATGGAATGTTTCCTGAAACTGCTCTATTTGTTGCACAAGAGGCAGCTCGCAATAATATTCCTATTTTAGTTGAGGCAGAATCACTGAGGGAAGGGTTGGACGAGCTCTTGAAGCTAGCAGATTTTGTTACATGCTCTGCAAAGTTTCCACAGGCTTGGACGCAAGCACCATCTATCCCGAGTGCACTGGTTTCCATGCTTTTAAGATTGCCAAATATCAACTTTGTGGTTGTGACTTTGGGTGAAGGTGGTTGTCTAATGTTAGAAAGAAGTGCAAATGAGGATTCTGACATAGAAGAAAGGGATGTGGAGAGTTTCTTGGAATTCTTATATAAAGGGAAAGATGATAGCTTGGCTATCCCTACCTGTATACCATCGGCGGTGACAAAATTCAGAGCAAATGGAATAGGGACAATTTGTGGGAGATTCTATATTGGAACAGCTGAGAAGATACCAGATTCTGAGCTGATTGATACAACTGGTGCTGGGGATGCTTTTATTGGAGCCATTATGTATGCTATCTGTGCAAACATGGTACCAGAGAAAATGTTGCCACTTGCTGCTCAAGTGGCAGCTGCCAAGTGTAGAGCTTTGGGAGCTCGAACTGGTCTTCCACGTCGGACAGATCCACATGTGGCATCGTTTTTACACTAG 1215 0.4757 MACVLKLFAVTNGSVFSLHLNSRRRFHRRFNAKIKMSSSDAALPSLPDNRTVVGFGMTAVDFLATVDGFPKPDDKVRSASLKVEGGGNAGNALTCAARLGLKPKLISKVADDSHGFAILKELEADGVDTSFIVVSKGGSSTFSYVLVDNQTKTRTSIYTPGDPPMMPDDLSQSTLLSAFDGARLVYFDGMFPETALFVAQEAARNNIPILVEAESLREGLDELLKLADFVTCSAKFPQAWTQAPSIPSALVSMLLRLPNINFVVVTLGEGGCLMLERSANEDSDIEERDVESFLEFLYKGKDDSLAIPTCIPSAVTKFRANGIGTICGRFYIGTAEKIPDSELIDTTGAGDAFIGAIMYAICANMVPEKMLPLAAQVAAAKCRALGARTGLPRRTDPHVASFLH* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1425 404 CDD ribokinase_group_B 52 393 - -
Gso3g1425 404 SUPERFAMILY Ribokinase-like 50 395 IPR029056 -
Gso3g1425 404 PRINTS Ribokinase signature 54 75 IPR002139 GO:0016301
Gso3g1425 404 PRINTS Ribokinase signature 81 100 IPR002139 GO:0016301
Gso3g1425 404 PRINTS Ribokinase signature 263 274 IPR002139 GO:0016301
Gso3g1425 404 PANTHER PFKB FAMILY CARBOHYDRATE KINASE 29 404 - -
Gso3g1425 404 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 29 404 - -
Gso3g1425 404 Gene3D - 50 389 IPR029056 -
Gso3g1425 404 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 345 358 IPR002173 GO:0016773
Gso3g1425 404 Pfam pfkB family carbohydrate kinase 336 392 IPR011611 -
Gso3g1425 404 Pfam pfkB family carbohydrate kinase 51 278 IPR011611 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1425 Gso-Chr3 40212097 40216971 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1425 - - gmx:100792838 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1425 3 40212097 40216971 Gso10g0358 10 3762714 3767439 PCT
Gso10g0358 10 3762714 3767439 Gso3g1425 3 40212097 40216971 PCT