Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1406 ATGGCGTCTTCGTATCCCGGTTCCGTTAGTGCCGCGCAGGTTGGTTCCTACTTCGTGGGACAGTACTACCAGATTCTTCGCCAGCAACCGAATCTTGTTCACCAGTTTTACTCCGATTCCAGCAGCATGATTCGCGTCGACGGAGATTCAGTTGAAACCGCGCACGATGTGTTGCAAATTCATTCAATTGTATCGTTACTGAATTTTACTACGATTGAAATCAAGACAATTAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGTCTCAGGTTTTGTGAAGATAAAGGATATCAGTGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTACATTGATGATGAAGTAACGTACCCAAATCTGGTACCAGTGGCATCTGAAACCATTGACACACAACCACATCTTTCTGCTTCACTTGCTGAGCCACCAGCAGTTTCAGACTACGGTTTGGAGGAAGAAGCCAGGGAATATGTCAACTCAGTTCATATAGATGATGATCCAGTGGACGAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGAACTTGAAACCGAAATTGTGGAGGAGGAAACTCCCGTACAGGAGGCATCTCCACCAATTCATAGCATTGGACACACTGTCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTTGAGGAGCCTCCTAAGAAAACATATGCATCTATTTTACGAGTTTCCAAAGGGCAGCCAGTGTTGTCAGCTGCTCCACAGTATGCTCCACAACATTCTTTTAAAAGTGCCCCACCTCCTTCCGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGTTCCTGAGTCAGGGATTGAGGCCGCAGAAGAAGGCTATGGACTAGAAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCCGCTAATGTTACTGAAGCAGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGCCTGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTGGAATTTGAAGACATTGTTGGTGTTCAAAATGCACTTCAGGCTTCTCCAATCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTCGGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTAATCAGGATAGTTCAGACTACACCAGACTAAGAGGCGATGGTTATCTTCAGCGTGGTTCCCGATGA 1362 0.4589 MASSYPGSVSAAQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAHDVLQIHSIVSLLNFTTIEIKTINSLDSWDGGVLVMVSGFVKIKDISGKRKFVQTFFLAPQEKGYFVMNDMFHYIDDEVTYPNLVPVASETIDTQPHLSASLAEPPAVSDYGLEEEAREYVNSVHIDDDPVDEYSLPEHQQQLQEELETEIVEEETPVQEASPPIHSIGHTVQEPPVALVEESFEEPPKKTYASILRVSKGQPVLSAAPQYAPQHSFKSAPPPSELNHVAQPAVQQSSSASMYVPESGIEAAEEGYGLEEEDEVTSVYVRNLPANVTEAEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIVGVQNALQASPIQLAGRQVYIEERRPNSVGAARGGRRGRGRGSYQADAPRGRFGGRSMGRGGNQDSSDYTRLRGDGYLQRGSR* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1406 453 Gene3D - 304 447 IPR012677 -
Gso3g1406 453 PANTHER GB|AAD20086.1 9 447 - -
Gso3g1406 453 MobiDBLite consensus disorder prediction 396 453 - -
Gso3g1406 453 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 447 IPR039539 -
Gso3g1406 453 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Gso3g1406 453 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Gso3g1406 453 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Gso3g1406 453 SMART rrm1_1 320 392 IPR000504 GO:0003723
Gso3g1406 453 CDD RRM_SF 321 392 - -
Gso3g1406 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 404 IPR000504 GO:0003723
Gso3g1406 453 CDD NTF2 10 130 IPR018222 -
Gso3g1406 453 SUPERFAMILY RNA-binding domain, RBD 315 426 IPR035979 GO:0003676
Gso3g1406 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 384 IPR000504 GO:0003723
Gso3g1406 453 Gene3D - 5 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1406 Gso-Chr3 40009843 40016103 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1406 - - gmx:100787900 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1399 19 42821195 42828065 Gso3g1406 3 40009843 40016103 GST