Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1399 ATGGCGTCTTCGTATCCCGGTTCCGTTAGTGCCGCACAGGTTGGTTCCTACTTCGTGGGACAGTACTACCAGATTCTTCGCCAGCAACCGAATCTCGTTCACCAGTTCTACTCCGATTCCAGCAGCATGATTCGCGTTGACGGAGACTCCGTTGAAACCGCGCACGATGTGTTGCAAATTCATTCAATTGTCTCGTTACTGAATTTTACTACAATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGCCTCAGGTTTTGTGAAGATAAAGGATATCGGTGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTTCATTGATGATGGAGTAATGTACCCAAATCTGGTACCAGTGGCATCCGAAACGATTGACACACAACCACATCTTTCTGCTTCTCTTGCTGAGCCACCAGCAGTTTCAGACTACGGCTTAGAGGAAGAAGCCAGGGAATATGCCAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGAACTTGAAACCGAAATTGTGGTGGAGGAAACTTCCGTACAGGAGGCATCTCCACCAATTCATACCGTTGCACACACTATCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTTGAGGAGCCTCCTAAGAAAACATATGCATCTATTTTACGAGTTTCCAAAGGGCTGCCAGTGTTGTCAGCTGCTCCAAAGCATGCTCCACATTCTTTCAAAAGTGCTCCACCTCCTCCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGCTCCCGAGTCAGGGACCGAGGCAGCAGAAGAAGGCTATGCACTAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCTGCTAATGTTACTGAAGTGGAGATTGACCAAGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTTGAATTTGAAGACATTATTGGTGTTCAAAATGCACTTCAGTCTTCTCCACTCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTCGGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGCTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTTATCAGGATGGTTCAGACTACACCAGACTAAGAGGTGATGGTTATCTTCAGCGTGGTTCACGATGA 1356 0.4631 MASSYPGSVSAAQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAHDVLQIHSIVSLLNFTTIEIKTINSLDSWDGGVLVMASGFVKIKDIGGKRKFVQTFFLAPQEKGYFVMNDMFHFIDDGVMYPNLVPVASETIDTQPHLSASLAEPPAVSDYGLEEEAREYANSVHIDDDPVDKYSLPEHQQQLQEELETEIVVEETSVQEASPPIHTVAHTIQEPPVALVEESFEEPPKKTYASILRVSKGLPVLSAAPKHAPHSFKSAPPPPELNHVAQPAVQQSSSASMYAPESGTEAAEEGYALEEDEVTSVYVRNLPANVTEVEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQSSPLQLAGRQVYIEERRPNSVGAARGGRRGRGRGSYQADAPRGRFGGRSMGRGGYQDGSDYTRLRGDGYLQRGSR* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1399 451 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Gso19g1399 451 Gene3D - 288 441 IPR012677 -
Gso19g1399 451 SUPERFAMILY RNA-binding domain, RBD 312 424 IPR035979 GO:0003676
Gso19g1399 451 CDD RRM_SF 319 390 - -
Gso19g1399 451 SMART rrm1_1 318 390 IPR000504 GO:0003723
Gso19g1399 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 377 IPR000504 GO:0003723
Gso19g1399 451 PANTHER GB|AAD20086.1 9 445 - -
Gso19g1399 451 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Gso19g1399 451 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 445 IPR039539 -
Gso19g1399 451 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Gso19g1399 451 Gene3D - 5 132 - -
Gso19g1399 451 CDD NTF2 10 130 IPR018222 -
Gso19g1399 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Gso19g1399 451 MobiDBLite consensus disorder prediction 394 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1399 Gso-Chr19 42821195 42828065 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1399 - - gmx:100812165 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1399 19 42821195 42828065 Gso3g1406 3 40009843 40016103 GST