Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1405 ATGGGAGATAGCGAAGCGGTGGTTACGGAAGCATCTGCTGCTGAGGCATATGCTTCGGCTGGTTATGCTGAGACCGGGTCGAATCCTGCTCCCGAGGCAGGTGCTACTGTTGATCAATCTGCTGGAGAAGCTGCTCAGGCCAGTTCAACTTATGGTTATGGTTATTCTAATGTTGGTGACGTGAATTCGTATGCTGGGGATCCGAATTCCATCCTACAGCAAGCTCAATTCAGTGCAACTGGTGAGTCCAAGCCAGCTGGTGGAGCGGCTGATTCTAACGAGGCCTCTGCTGGGGTTGGAAGCACAGCTGCTGACTCTACTATGGTATCTGACTACAATTCGTCTGTAAATGATGGTGTTGCCGGTGCAGTGACAAATACTTCTGGACTTGAAAACGGGAATGCGTTGGAGAATGCTGATGGGTCGGCTGATGAGAAACAGCAAGCAGATGGTTATGCAGCTGCCTTGTCTGCTGAAGAAGATCGACTGTGGAATATAGTGAGAGCTAATTCTTTAGATTTCACTGCCTGGACTTCCTTGATTGAAGAGACAGAGAAGGCAGCAGAGGACAATATTTTGAAGATTCGAAGAGTCTATGATGCTTTTCTAGCAGAATTTCCCTTGTGCTATGGTTATTGGAAGAAATATGCTGACCATGAGGCACGCCTTGGCTCTATTGATAAAGTTGTCGAAGTCTACGAGCGTGCGGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAACCACATATGGGGATCCAGACACTGTTCGTAGGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTATATGCAGCAGGACTGGGCCCGCCTTGCCGTGATCTACACCAGAATATTAGAGAACCCAAATCAACAATTAGATCGGTATTTCAGCAGCTTCAAAGAGTTAGCTGGAAATCGACCTTTATCAGAGTTACGAACTGCTGATGAAGCTGCTGCAGTGGCAGGAGTTGCTTCAGAGGCTACTGGCCAAGCTACTGAGGGAGAGGTTCATCCTGATGGTGCAGAGCGTTCTCCTAAATCTGTAAGTGCTGGCTTAACAGAAGCAGAAGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGGAGGCCCTACTTTCATGTACGGCCCCTCAATGTTGGAGAGCTTGAGAATTGGCATAACTATCTGGACTTTATAGAAAGGGAGGGTGACTTGAGCAAGATTGTCAAGTTGTATGAGAGATGTGTCATTGCATGTGCCAATTATCCTGAGTATTGGATACGCTATGTTTTGTGTATGGAAGCCAGTGGAAGCATGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAGAGACAACCAGAGATACATATTTTTTGTGCTCGGTTCAAGGAGCAGACTGGAGATATAGATGGTGCTAGAGCTGCATATCAACTTGTGCATACTGAAACTTCTCCTGGTCTTCTTGAAGCAATTATCAAACATGCCAATATGGAATACCGACTGGAAAAAATGGAGGATGCCTTCTCTTTGTATGAACAGGCCATTGCCATTGAGAAAGGAAAAGAACATTCACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTGGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAGGCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGTGTTGATATTGACTTTCTGGAGTCATGGGTTGTCAAATTCATAATGCCTAACTCAGAGAGTCCTGGTGTAGCAAGTGCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGGGCTGAAGATAGGCATGCCAAATTGTTTTTGCCACACAGAAGCATGTCAGAGTTGAAAAAACGTCATGCTGAGGATTTCTTAGCTTCAGACAAAACAAAAGCGCCGAGATCTTATTCTGCTCAATCACCTGCCCAATCTGGGATGGGTGCATATCCAAATGCACAGAACCAGTGGTCTAATTATGGAGTTCAACCTCAAACTTGGCCTCCAGTTACACAAGCACAAGGGCAACAATGGACTGCTGGCTACACCCAACAGGCTTCCTACGGGGCTTATGCTGGATATGGGGGCAACTATGCGAATTCTCAATTGCCTACATCAGTTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAGCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCACAGCAACCTGCTGCGGTTCCTCAAGCCTATTACGGGAGTTATTATTGA 2490 0.4494 MGDSEAVVTEASAAEAYASAGYAETGSNPAPEAGATVDQSAGEAAQASSTYGYGYSNVGDVNSYAGDPNSILQQAQFSATGESKPAGGAADSNEASAGVGSTAADSTMVSDYNSSVNDGVAGAVTNTSGLENGNALENADGSADEKQQADGYAAALSAEEDRLWNIVRANSLDFTAWTSLIEETEKAAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDMWLHYCIFAITTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAVIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTADEAAAVAGVASEATGQATEGEVHPDGAERSPKSVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNVLARATQVFVKRQPEIHIFCARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKHANMEYRLEKMEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENVLLSKPLLEAILHFEAIQPLPKRVDIDFLESWVVKFIMPNSESPGVASATEREELSSIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLASDKTKAPRSYSAQSPAQSGMGAYPNAQNQWSNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGGNYANSQLPTSVPQSTAYGAYPPAYPAQPAVPQQNYAQPVAAAPAQQPAAVPQAYYGSYY* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1405 829 MobiDBLite consensus disorder prediction 23 46 - -
Gso3g1405 829 Gene3D Tetratricopeptide repeat domain 165 331 IPR011990 GO:0005515
Gso3g1405 829 MobiDBLite consensus disorder prediction 351 373 - -
Gso3g1405 829 SUPERFAMILY TPR-like 383 686 IPR011990 GO:0005515
Gso3g1405 829 MobiDBLite consensus disorder prediction 702 726 - -
Gso3g1405 829 MobiDBLite consensus disorder prediction 77 102 - -
Gso3g1405 829 PANTHER PRE-MRNA-PROCESSING FACTOR 39 44 815 - -
Gso3g1405 829 SMART hat_new_1 259 294 IPR003107 GO:0006396
Gso3g1405 829 SMART hat_new_1 543 578 IPR003107 GO:0006396
Gso3g1405 829 SMART hat_new_1 190 222 IPR003107 GO:0006396
Gso3g1405 829 SMART hat_new_1 439 471 IPR003107 GO:0006396
Gso3g1405 829 SMART hat_new_1 296 329 IPR003107 GO:0006396
Gso3g1405 829 SMART hat_new_1 224 256 IPR003107 GO:0006396
Gso3g1405 829 MobiDBLite consensus disorder prediction 707 726 - -
Gso3g1405 829 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 44 815 - -
Gso3g1405 829 SUPERFAMILY TPR-like 167 327 IPR011990 GO:0005515
Gso3g1405 829 Gene3D Tetratricopeptide repeat domain 419 714 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1405 Gso-Chr3 39993131 40003567 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1405 K13217 - gmx:100787373 1519.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1398 19 42807754 42817545 Gso3g1405 3 39993131 40003567 GST