Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1398 ATGGGAGATAGCGAACCGGTGGTCACTGAAGCATCTGCTGCTGAGGCATATGCTTCGGCTGGTTATGCTGAGACTGGGTCAAATCCTACTCCCGAGGCAGGTGCTGCTGTTGATCAATCCGCTGGAGAAGCTGCTCAGGCCAGCTCAACTTACGGATATGGTTATTCTAATGTTGGTGACACGAATGCGTATGCTGGAGATCCGAATTCCGTCCTACAGCAAGCTCATTTCAGTGCAACTGGTGATTCCAAGCCAGCTGGTGCAGCGGCTGATGCTAACGAGGCCTCTGCTGGGGTTGGAACCACAGCCGCCGAGTCTACTATGGTTTCCGACTACAACTCGTCCGTAAATGGCGGTGTTGTTGGTGCAGTGGCAAATGCCGTGGGACTTGAAAACGGGAATGCGTTGGAGAATGCTGATGGGTCGGCTGATGAGAAACAGCTTGCAGATGGTTATGCAGCTGCCTTGTCTGCTGAAGAAGACCGACTGTGGAATATTGTAAGAGCTAATTCTTTAGATTTCACTGCCTGGACTTCCTTGATTGAAGAGACAGAGAAGACAGAGGACAATATTTTGAAGATTCGAAGAGTCTATGATGCTTTTCTAGCAGAATTCCCCTTGTGCTATGGTTATTGGAAGAAATATGCTGACCATGAGGCACGTCTTGGCTCTATCGATAAAGTTGTTGAAGTGTATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCCTGCCTTGCTGTGATCTACACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGCTTCAAAGAGTTAGCTGGAAATCGTCCTTTATCAGAGTTACGAACTGCTGATGAAGCTGCTGCAGTGGCAGGAGTTGCTTCAGAGGCTACTGGCCAAGCTACTGAGGGAGAAGTTCATCCTGATGGTGCAGAGCGTTCTCCTAAATCTGTAAGTGCTGGCTTAACAGAAGCAGAAGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGGAGGCCCTACTTTCATGTACGGCCCCTCAATGTTGGAGAGCTTGAGAATTGGCATAACTATTTGGACTTTATAGAAAGGGAAGGGGACTTGAGCAAGATTGTCAAGTTGTATGAGAGATGTGTCATTGCATGCGCCAATTATCCGGAGTATTGGATACGCTATGTTTTGTGTATGGAAGCCAGCGGAAGCATGGATCTTGCAAATAATGTTCTTGCTCGAGCAACCCAAGTCTTTGTTAAGAGACAACCAGAGATACATCTTTTTTGTGCTCGGTTCAAGGAGCAGACTGGAGATATAGATGGTGCTAGAGCTGCGTATCAACTTGTGCATACTGAAACTTCTCCTGGTCTTCTTGAAGCAATTATCAAACATGCCAATATGGAATACCGACTGGGAAAAATGGAAGATGCCTTCTCTTTGTATGAACATGCCATTGCTATTGAGAAAGGAAAAGAACATTCACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTGGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAGGCTTTATTGCATTTTGAGGCTATTCAACCTTTGCCAAAGCGTGTTGGTGTCGACTTTTTGGAGTCATGGGTTGTCAAATTCATAATGCCTAACTCAGAGAGTGCTGGTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGGCATGCCAAATTGTTTTTGCCTCACAGAAGCATGTCAGAGTTGAAAAAACGTCATGCTGAGGATTTCTTAGTTTCGGACAAAACAAAAGTGCCAAGATCGTATTCTGCTCAGTCACCTGCGCAATCTGCGATGGGTGCATATCCAAATGCGCAGAACCAGTGGACTAATTATGGAGTTCAACCTCAAACTTGGCCTCCAGTTACTCAAGCTCAAGGGCAACAATGGACTGCTGGCTACACCCAGCAGGCTTCCTACGGGGCTTATGCTGGATATGGGAGCAACTATGTAAATTCGCAATTGCCTACATCAGTTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAGCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTTGCAGCAGCAGCCCCTGCACAGCAACCTTCTGCGGTTCCTCAAGCCTATTACGGGAGTTATTATTGA 2490 0.4506 MGDSEPVVTEASAAEAYASAGYAETGSNPTPEAGAAVDQSAGEAAQASSTYGYGYSNVGDTNAYAGDPNSVLQQAHFSATGDSKPAGAAADANEASAGVGTTAAESTMVSDYNSSVNGGVVGAVANAVGLENGNALENADGSADEKQLADGYAAALSAEEDRLWNIVRANSLDFTAWTSLIEETEKTEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPNTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWACLAVIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTADEAAAVAGVASEATGQATEGEVHPDGAERSPKSVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNVLARATQVFVKRQPEIHLFCARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKHANMEYRLGKMEDAFSLYEHAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENVLLSKPLLEALLHFEAIQPLPKRVGVDFLESWVVKFIMPNSESAGVASPTEREELSSIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLVSDKTKVPRSYSAQSPAQSAMGAYPNAQNQWTNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGSNYVNSQLPTSVPQSTAYGAYPPAYPAQPAVPQQNYAQPVAAAAPAQQPSAVPQAYYGSYY* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1398 829 Gene3D Tetratricopeptide repeat domain 165 330 IPR011990 GO:0005515
Gso19g1398 829 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 84 813 - -
Gso19g1398 829 SMART hat_new_1 438 470 IPR003107 GO:0006396
Gso19g1398 829 SMART hat_new_1 583 615 IPR003107 GO:0006396
Gso19g1398 829 SMART hat_new_1 189 221 IPR003107 GO:0006396
Gso19g1398 829 SMART hat_new_1 258 293 IPR003107 GO:0006396
Gso19g1398 829 SMART hat_new_1 223 255 IPR003107 GO:0006396
Gso19g1398 829 MobiDBLite consensus disorder prediction 22 43 - -
Gso19g1398 829 SUPERFAMILY TPR-like 167 326 IPR011990 GO:0005515
Gso19g1398 829 SUPERFAMILY TPR-like 382 685 IPR011990 GO:0005515
Gso19g1398 829 MobiDBLite consensus disorder prediction 350 372 - -
Gso19g1398 829 PANTHER PRE-MRNA-PROCESSING FACTOR 39 84 813 - -
Gso19g1398 829 Gene3D Tetratricopeptide repeat domain 418 721 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1398 Gso-Chr19 42807754 42817545 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1398 K13217 - gmx:100810738 1506.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1398 19 42807754 42817545 Gso3g1405 3 39993131 40003567 GST