Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1393 ATGGATGATTCTGGAAGTAAAACTAAACTACTGAATCCATGGATGCTCCACTTTCAGAAACTCGCTCTCGAACTCAAGTGCCCTCTCTGTTTGAGTTTGTTCAAGAGGCCGGTATTACTTCCATGCAACCACTTGTTCTGCAATTCATGTTTGGCTGATTGCATAACGGCTGGGTCTGAATGCGCTGTTTGCAAGACAACGTATGCTCAAACAGATGTAAGGCACATACCTTTTGTGGAAAACGTGGTGGCAATATATAGAAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGTCGCGTTCTTCTGGTGATGGGAGGGTTTTGGAGCCGTGCCAAACAATTCTTAATTCAACTTCTAGTAGTTTAAAAACTGGCAAGCTTCCTCGGAACTTAACTAATTTGAATGAGGTTGGGGTTGGCCAAACTTTCAAATCCAAGAGTGTGGTGCATGATAAAGCTGAGGAGCTTGAGTTGTCTTGTGGGAGAGGGAAGCCCAATCCAATGCAATCTTCCCTGATGGGACTTGGGGGCCGAGAACAGTGTGGAGTTATGGAAATGGATGTGAATCAAGTAACACAATCAGCACCTGATAGCCCGCCCTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGATAGTGAGCATCCATTACCTCCTGGCAGATTGGAAAATTCTTCACTAAACAGAGCAAGCACAGGAAATGGAAATTTGAAAGAAAGAATGGGACAGCTTAGGTCTGAAAGTTCGGCCTCTGAAACTGAGGGTCTGGCAAGGGATCTCAAGAGGCAGAAGATTCTGGACTTTAAACCTGGAAAGGACCCTGGTGCACCATTGCCCACAAATGCTTCAATTTACTTGTGTCCAATTGGAAGGATCTGCTCATTTTGCCAATCCTCTAAAATCTCAGAGGTTACTGGACCAATGCTGCATTATGCAAATGGGAACTTAGTTACCGGAGATGCAGCCATGAAACCAAATGTTGTACCTGTGCATAGAATTTGCATTGACTGGGCACCACAAGTGTACTTTGATGGTGAAGTGGTTAAGAATTTGAAGGCAGAGGTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGCTGCTATGTCAAATCCTGTAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCATGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATTAGGTCCAAGAAACAGGCAACACAGAAGCATCCCACTTTGTCTCATCTGCCATCTCACCACTCAAATCCTATTGAAGCTTCCCATGATGATGATGAAAAATTAGTATTTTGTGGATCTGCTCTATCAAATGAAGAAAAGGTACTTTTGATCAATTATGCAAGCAAGGTTGGTGCTACTGTGACCAAGTTTTGGACCTCAAATGTCACTCATGTAATTGCAGCAACTGATGCACATGGAGCATGCTCCAGGACATTGAAAGTTCTGATGGCAATTCTAAATGGACGATGGGTTCTAAAAATGGATTGGATAAAAGCATGCATGGAAGAGGTAAATCCTGTGGAGGAAGAACCATATGAAATTAATCTTGACAACCAAGGATGTCAAGGTGGCCCAAAAGCTGGCAGACTTGGGGCATTGGCCAATGAGCCAAAGCTATTCAATGGCTTAAAGTTTTATTTTTCTGGGGATTATGTGTCAACTTATAAGGAAGATCTCGAAGAATTAATTGAAGTGGGAGGAGGTAGTGTTTTGAGAAGCAAGGAAGAATTGGAATCACAAAGACATGAATGCAAAGGAGATTCTTCACAGTTGCTGATTGTTTACAACCTGGATCCTCCTCAAGGATGCAAATTGGGGGAGGAAGTTTCAATTCTTTGGCAAAGGCTAAACGATGCAGAGGATTTAGCTGCTAACACTTTACAAGTCATTGGTCACACATGGATTCTTGAATCAATTGCTGCATGTAAATTGCAGCCTTTTGTTAACTAA 2037 0.4242 MDDSGSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITAGSECAVCKTTYAQTDVRHIPFVENVVAIYRSLDATFCASLFQSRSSGDGRVLEPCQTILNSTSSSLKTGKLPRNLTNLNEVGVGQTFKSKSVVHDKAEELELSCGRGKPNPMQSSLMGLGGREQCGVMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPGRLENSSLNRASTGNGNLKERMGQLRSESSASETEGLARDLKRQKILDFKPGKDPGAPLPTNASIYLCPIGRICSFCQSSKISEVTGPMLHYANGNLVTGDAAMKPNVVPVHRICIDWAPQVYFDGEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISDCRWDHEDFLLLCPVHSNVKFPCEKIRSKKQATQKHPTLSHLPSHHSNPIEASHDDDEKLVFCGSALSNEEKVLLINYASKVGATVTKFWTSNVTHVIAATDAHGACSRTLKVLMAILNGRWVLKMDWIKACMEEVNPVEEEPYEINLDNQGCQGGPKAGRLGALANEPKLFNGLKFYFSGDYVSTYKEDLEELIEVGGGSVLRSKEELESQRHECKGDSSQLLIVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1393 678 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Gso3g1393 678 Pfam BRCA1 C Terminus (BRCT) domain 459 530 IPR001357 -
Gso3g1393 678 SUPERFAMILY RING/U-box 24 87 - -
Gso3g1393 678 ProSiteProfiles Extended PHD (ePHD) domain profile. 294 414 IPR034732 -
Gso3g1393 678 ProSiteProfiles BRCT domain profile. 457 543 IPR001357 -
Gso3g1393 678 MobiDBLite consensus disorder prediction 431 450 - -
Gso3g1393 678 SUPERFAMILY BRCT domain 457 544 IPR036420 -
Gso3g1393 678 CDD BRCT_Bard1_rpt1 457 530 - -
Gso3g1393 678 Gene3D BRCT domain 454 559 IPR036420 -
Gso3g1393 678 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 9 676 IPR031099 GO:0006281|GO:0006974
Gso3g1393 678 SMART ring_2 27 64 IPR001841 -
Gso3g1393 678 SMART ring_2 367 413 IPR001841 -
Gso3g1393 678 MobiDBLite consensus disorder prediction 228 255 - -
Gso3g1393 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 416 IPR013083 -
Gso3g1393 678 SMART BRCT_7 566 671 IPR001357 -
Gso3g1393 678 SMART BRCT_7 451 533 IPR001357 -
Gso3g1393 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 96 IPR013083 -
Gso3g1393 678 Pfam BRCT domain, a BRCA1 C-terminus domain 566 675 IPR001357 -
Gso3g1393 678 SUPERFAMILY BRCT domain 568 676 IPR036420 -
Gso3g1393 678 Gene3D BRCT domain 566 671 IPR036420 -
Gso3g1393 678 Pfam Zinc finger, C3HC4 type (RING finger) 24 68 - -
Gso3g1393 678 ProSiteProfiles Zinc finger RING-type profile. 27 65 IPR001841 -
Gso3g1393 678 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 9 676 - -
Gso3g1393 678 MobiDBLite consensus disorder prediction 193 261 - -
Gso3g1393 678 Pfam PHD-like zinc-binding domain 335 413 - -
Gso3g1393 678 ProSiteProfiles BRCT domain profile. 564 678 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1393 Gso-Chr3 39893240 39898789 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1393 K10683 - gmx:100784883 1358.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1388 19 42716997 42723589 Gso3g1393 3 39893240 39898789 GST