Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1388 ATGGATGATTCTGGAAGTAAAACTAAACTGTTGAATCCATGGATGCTCCACTTCCAGAAACTCGCTCTCGAACTCAAGTGCCCTCTCTGTTTGAGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAATTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAGGCAACGTATGCTCAAACAGATGTTAGGCATGTGCCTTTTGTGGAAAACGTGGTGGCAATATATAGAAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTGGTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTAGTAGTTTAAAAGCTGCCAAGCTTCCTCGGAATTTAACTAATTCAAATGAGGTTGGGGTTGGCAAGAATTTCAAATCCAAGAGTGTGGTGCATGACAAAGCAGAGGAGTTTGAGTTGTCTCGTGAGAGAGGGAAGCCCAATCCAATGCAATCTTCCCATATGGAACTTGGTGGCCGCGAAGAGTGTGGAGTTATGGAAATGGATGTGAATCAAGTGACACAATCAGCACCAGATAGCCCACCCTTTTGTGATACCAAAGGTTCAGATAATGACTTCAGTGATCAAGGCAGTGAGCATCCATTACTTCCTGGTAGATTGGAAAATTCTTCACTAAAGAGAGCTGGCACAGGAAATGGAAATTTGAAAGAAAGAATGGGACAGCTCAGGTCTGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGCAAGGGATCTCAAGAGACAGAAGAATCTGGACTTTAAACCTGGAAAGGAACCTGGTGCACCATTGCCCAAAATTGACATGTGTCCAACCGGAAGGATCTGTTCATTTTGCCAATCCTCTAAAATCTCAGAGGCTACTGGACCAATGCTGCATTATGCAAATGGAAACTTAGTTACAGGAGATGCAGCAATGAAACCAAATGTCATACCTGTGCATAGAATTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGGTGAAGTTGTTAAGAATTTGAAGGCAGAGGTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCCTGTAGAAGAACGTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCATGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATCAGGTCCAAGAAAAAGGCAACACAGAAGCATCCCACTTTTTCTCATCTGCCATCTCATCACTCAAATCGTCTTGAAGCTTCCCAGGATGCTAGTAAAAAATTGGTATTTTGTGGATCTGCTCTATCAAATGAAGAAAAGGTATTTTTGATCAATTATGCAAGCAAGGTTGGTGCTACTGTGACCAAGTTCTGGACCTCAAATGTCACCCATGTAATTGCAGCAACTGATGCACATGGAGCATGCTCCAGGACGTTGAAAGTTCTGATGGCAATTCTAAATGGACGATGGGTTCTAAAAATGGATTGGATAAAAGCATGCATGCAAGAGATAAATCCTGTAGAGGAAGAACCGTATGAAATTAATCTTGACAATCAAGGGTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCCAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGAGATTACGTGTCAACTTATAAGGAAGATCTTGAAGAATTAATTGAAGTGGGGGGAGGTACTGTTTTGAGAATCAAGGAAGAATTGGAAGCACACAGACATGAATGCAAAGGGGATTCTTCAAAGTTGCTAGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTGGGGGAGGAAGTTTCAATTCTTTGGCAAAGGCTAAACGACGCAGAGGATTTAGCTGCGAACACTTTACAAGTCATTGGTCACACATGGATTCTTGAATCAATCGCTGCATGTAAATTGCAGCCTTTTGTTTACTAA 2028 0.4265 MDDSGSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITAGPGCAVCKATYAQTDVRHVPFVENVVAIYRSLDATFCASLFQPCSSGDGRVLEPCQAILNSTSSSLKAAKLPRNLTNSNEVGVGKNFKSKSVVHDKAEEFELSRERGKPNPMQSSHMELGGREECGVMEMDVNQVTQSAPDSPPFCDTKGSDNDFSDQGSEHPLLPGRLENSSLKRAGTGNGNLKERMGQLRSESSASETEGLARDLKRQKNLDFKPGKEPGAPLPKIDMCPTGRICSFCQSSKISEATGPMLHYANGNLVTGDAAMKPNVIPVHRICIDWAPQVYFVGEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISDCRWDHEDFLLLCPVHSNVKFPCEKIRSKKKATQKHPTFSHLPSHHSNRLEASQDASKKLVFCGSALSNEEKVFLINYASKVGATVTKFWTSNVTHVIAATDAHGACSRTLKVLMAILNGRWVLKMDWIKACMQEINPVEEEPYEINLDNQGCQGGPKAGRLRALANEPKLFSGLKFYFSGDYVSTYKEDLEELIEVGGGTVLRIKEELEAHRHECKGDSSKLLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVY* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1388 675 Pfam PHD-like zinc-binding domain 332 410 - -
Gso19g1388 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 413 IPR013083 -
Gso19g1388 675 Pfam BRCT domain, a BRCA1 C-terminus domain 563 672 IPR001357 -
Gso19g1388 675 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Gso19g1388 675 Pfam BRCA1 C Terminus (BRCT) domain 454 527 IPR001357 -
Gso19g1388 675 ProSiteProfiles Extended PHD (ePHD) domain profile. 291 411 IPR034732 -
Gso19g1388 675 Pfam Zinc finger, C3HC4 type (RING finger) 24 68 - -
Gso19g1388 675 ProSiteProfiles BRCT domain profile. 561 675 IPR001357 -
Gso19g1388 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 96 IPR013083 -
Gso19g1388 675 MobiDBLite consensus disorder prediction 256 273 - -
Gso19g1388 675 MobiDBLite consensus disorder prediction 193 282 - -
Gso19g1388 675 Gene3D BRCT domain 450 556 IPR036420 -
Gso19g1388 675 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 9 673 - -
Gso19g1388 675 SUPERFAMILY BRCT domain 454 541 IPR036420 -
Gso19g1388 675 SMART BRCT_7 448 530 IPR001357 -
Gso19g1388 675 SMART BRCT_7 563 668 IPR001357 -
Gso19g1388 675 Gene3D BRCT domain 563 668 IPR036420 -
Gso19g1388 675 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 9 673 IPR031099 GO:0006281|GO:0006974
Gso19g1388 675 MobiDBLite consensus disorder prediction 193 210 - -
Gso19g1388 675 ProSiteProfiles Zinc finger RING-type profile. 27 65 IPR001841 -
Gso19g1388 675 SUPERFAMILY RING/U-box 24 87 - -
Gso19g1388 675 SUPERFAMILY BRCT domain 565 673 IPR036420 -
Gso19g1388 675 SMART ring_2 364 410 IPR001841 -
Gso19g1388 675 SMART ring_2 27 64 IPR001841 -
Gso19g1388 675 CDD BRCT_Bard1_rpt1 454 529 - -
Gso19g1388 675 ProSiteProfiles BRCT domain profile. 454 540 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1388 Gso-Chr19 42716997 42723589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1388 K10683 - gmx:100306420 1349.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1388 19 42716997 42723589 Gso3g1393 3 39893240 39898789 GST