Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1313 ATGGAATCCGAATCCAAGAACGACACCCAAGTCGCTCCGGCCTTAATCGCCGTTCACCCCGACCAATCCTCCGTCGCCGTCGCAGTGGGCCCGCACCTCCGGGTCTTCGACCTCCTTAGCGGTTCTGCAGCTTCTTTAACCGACGACTCTGATGGCGCCGTCCCGTTCCACAAGGACAACATCAGAGCCATTCGCTTCGGCGCAAAAGGAAAACTCTTCGTGTCCGCAGGTGACGATAAAACCCTCAAGGTCTGGTCAACACAGTCCTGGCGTTGCATCACCACCGTGTCCTCCGAGAAGAGAGTAACTGCAGTAGCAATCAGCGACGACGGAACATTCGTGTGCTTCGCCGACAAATTCGGCGTTGTTTGGGTTGTGGATCTCGATCCTCCGTTACACGATGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCACCGGATGGTCGCTATATTTTAAGCGCAGATCGTGATTTCAAAATTCGAGTTACTAATTTTCCCAAGAAGCCTTTAAATGGAGCTCAACAGATACAAAGTTTCTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCCTTCATTCAGGCTCAGGAATGCCCTCAAGGCTTTCTTCTATCTGGCAGTGGTGATTCCACAGTTCGATTGTGGAATATTGACTCTGGAGCACTTCTTGATACTTGCGAGGTTGCAATTAAGGCAGGTCTTTTAGAGTCTAATGGTAAGGCCGAGGAGCGTGGCCATGCTGTTACTGATTTATGTACCGTACTGGATGGTTTGCTTGTTGCAGTGGCCATTCAGAGCTTGCAAGGAATAGTATTGTTGAGTTGCAATGTTTCTGCACAAACTCTTTCCGTTGCCAAGGTGGTTTCTGTTGCTGGAGAGGCCTTTGTCCCTACCTGCTTGGGGAGCAGCCCATCTATAGGGAAATTGTGGATGGTTACAGGTGTCTCTGGTCTACCTGGTTTTAATTATCCCTCTTTGGCTTGTGTGCGAGTAATTTCCAGTATTGATGTTGAGAAAGAGCCAGTTGTTCTGGGAGATGATAACATTCCTGGGGGAGAAAAACTACTAGAAACGTTGCAAGGATCTGCATCCGTTGATGACAATGCTTTTCTAGCAGCAGCTGAAGCAGTCAAAACAGCAATGTGCAACCTATTGATAAAAAAACAATACCCTTCAGAGAATAGAGAATATAGGAAGAAAAGCAGAAATGATAGAAAACTCAAGGGTTAG 1260 0.4746 MESESKNDTQVAPALIAVHPDQSSVAVAVGPHLRVFDLLSGSAASLTDDSDGAVPFHKDNIRAIRFGAKGKLFVSAGDDKTLKVWSTQSWRCITTVSSEKRVTAVAISDDGTFVCFADKFGVVWVVDLDPPLHDDKKPAPLLSHYCSIITSLEFSPDGRYILSADRDFKIRVTNFPKKPLNGAQQIQSFCLGHTEFVSCLAFIQAQECPQGFLLSGSGDSTVRLWNIDSGALLDTCEVAIKAGLLESNGKAEERGHAVTDLCTVLDGLLVAVAIQSLQGIVLLSCNVSAQTLSVAKVVSVAGEAFVPTCLGSSPSIGKLWMVTGVSGLPGFNYPSLACVRVISSIDVEKEPVVLGDDNIPGGEKLLETLQGSASVDDNAFLAAAEAVKTAMCNLLIKKQYPSENREYRKKSRNDRKLKG* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1313 419 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 22 411 IPR028884 GO:0036265
Gso3g1313 419 Gene3D - 99 353 IPR015943 GO:0005515
Gso3g1313 419 Gene3D - 12 98 IPR015943 GO:0005515
Gso3g1313 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 54 89 - -
Gso3g1313 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
Gso3g1313 419 Pfam WD domain, G-beta repeat 143 172 IPR001680 GO:0005515
Gso3g1313 419 Pfam WD domain, G-beta repeat 189 226 IPR001680 GO:0005515
Gso3g1313 419 Pfam WD domain, G-beta repeat 56 86 IPR001680 GO:0005515
Gso3g1313 419 ProSitePatterns Trp-Asp (WD) repeats signature. 213 227 IPR019775 -
Gso3g1313 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 235 IPR001680 GO:0005515
Gso3g1313 419 SUPERFAMILY WD40 repeat-like 16 272 IPR036322 GO:0005515
Gso3g1313 419 SMART WD40_4 135 174 IPR001680 GO:0005515
Gso3g1313 419 SMART WD40_4 182 226 IPR001680 GO:0005515
Gso3g1313 419 SMART WD40_4 89 127 IPR001680 GO:0005515
Gso3g1313 419 SMART WD40_4 47 86 IPR001680 GO:0005515
Gso3g1313 419 PANTHER WD40 REPEAT PROTEIN 4 14 416 IPR028884 GO:0036265
Gso3g1313 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1313 Gso-Chr3 38980042 38982805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1313 57 233 Miscellaneous Gene Families AT5G08390 23.889 1.86e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1313 K15443 - gmx:100809122 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1311 19 41805985 41809016 Gso3g1313 3 38980042 38982805 GST