Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1311 ATGAGCATGGAATCCGAATCCAAGAACGACACCGAAGTCGCTCCGGCCTTAATCGCCGTTCACCCCGACCAATCCTCCGTCGCCGTCGCTGTGGGCCCGCACCTCCGCGTCTTCGACCTCCTTAGCGGTTCTGCAGCTTCTTTAACCGACGATTCTGATTGCGCCCCGCTCCATAAGAACAACATCAGAGCCATTCGCTTCGGCGCCAAAGGAAAACTATTCGTGTCCGCCGGTGACGATAAAACAGTCAAGGTCTGGTCAACACAGTCCTGGCGTTGCATCACCACCGTGTCCTCCGAGAAGAGAGTTACTGCAGTTGCAATTAGCAACGACGGAACATTCGTGTGCTTCGCCGACAAATTCGGCGTTGTTTGGGTTGTGGATGTTGATCCTCCGTTACACGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCACCGGATGGTCGTTTTATTTTAAGCGCCGATCGTGATTTCAAAATTCGCGTTACTAATTTTCCCCAGAAGCCCTTAAATGGAGCTCACCAGATACAAAGTTTCTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCCTTCATTCAGGCTCAGGAATGCCCTCAAGGCCTTCTTCTCTCTGGCAGTGGTGATTCCACAGTTCGATTGTGGAATATTGACTCTGGAGCACTTCTAGATACTTGTGAGGTTGCAATCAAGGCAGGGCTTTTAGAGTCTAATGGTAAAGCAGAGGAGCATGGCCATGCTGTTATTGATTTATGCACTGTCCTGGATGGTTTGATTGTTGCAGTGGCCATTCAGAGCTTGCAAGGAATAGTATTGCTGAGTTGCAATGTTTGTGCACAAACTCTTTCTTTTGCCAAGGTGGTTTCTGTTGCTGGAGAGGCCTTTGTCCCTACCTGCTTGGGGAGCAGCCCCTCTATAAGGAAATTGTGGATGGTTACAGGTGTCTCTGGTCTACCTGGTTGTAATTATCTCTCTTTGGCTCGTGTGCGAGTAATTTCTGGTATTGATGTTGAGCAAGAGCCAGTTGTTCCGGGAGATGATAACATACCCGGGGGAGAAAAACTACTAGAAACGCTGCAAGGATCTGCATCCGTTGATGACAGTGCTTTTCTAGCAACAGCTGAAGCTGTCAAAACAGCAATGTGCAACCTATTGATAAAAAAACAATACCCTTCAGAGAATAGAGAATATAGGAAGAAAAGCAGAAATGATAGAAAACTAAAGGGCTAG 1260 0.4754 MSMESESKNDTEVAPALIAVHPDQSSVAVAVGPHLRVFDLLSGSAASLTDDSDCAPLHKNNIRAIRFGAKGKLFVSAGDDKTVKVWSTQSWRCITTVSSEKRVTAVAISNDGTFVCFADKFGVVWVVDVDPPLHDKKPAPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTNFPQKPLNGAHQIQSFCLGHTEFVSCLAFIQAQECPQGLLLSGSGDSTVRLWNIDSGALLDTCEVAIKAGLLESNGKAEEHGHAVIDLCTVLDGLIVAVAIQSLQGIVLLSCNVCAQTLSFAKVVSVAGEAFVPTCLGSSPSIRKLWMVTGVSGLPGCNYLSLARVRVISGIDVEQEPVVPGDDNIPGGEKLLETLQGSASVDDSAFLATAEAVKTAMCNLLIKKQYPSENREYRKKSRNDRKLKG* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1311 419 Gene3D - 99 248 IPR015943 GO:0005515
Gso19g1311 419 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 24 411 IPR028884 GO:0036265
Gso19g1311 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 235 IPR001680 GO:0005515
Gso19g1311 419 SUPERFAMILY WD40 repeat-like 18 272 IPR036322 GO:0005515
Gso19g1311 419 Gene3D - 14 98 IPR015943 GO:0005515
Gso19g1311 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 230 - -
Gso19g1311 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 96 IPR001680 GO:0005515
Gso19g1311 419 SMART WD40_4 182 226 IPR001680 GO:0005515
Gso19g1311 419 SMART WD40_4 47 87 IPR001680 GO:0005515
Gso19g1311 419 SMART WD40_4 135 174 IPR001680 GO:0005515
Gso19g1311 419 SMART WD40_4 90 128 IPR001680 GO:0005515
Gso19g1311 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 55 90 - -
Gso19g1311 419 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Gso19g1311 419 Pfam WD domain, G-beta repeat 58 87 IPR001680 GO:0005515
Gso19g1311 419 Pfam WD domain, G-beta repeat 143 172 IPR001680 GO:0005515
Gso19g1311 419 ProSitePatterns Trp-Asp (WD) repeats signature. 213 227 IPR019775 -
Gso19g1311 419 PANTHER WD40 REPEAT PROTEIN 4 16 416 IPR028884 GO:0036265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1311 Gso-Chr19 41805985 41809016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1311 58 233 Miscellaneous Gene Families AT5G08390 22.826 6.21e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1311 K15443 - gmx:100786310 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1311 19 41805985 41809016 Gso3g1313 3 38980042 38982805 GST