Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1294 ATGGCGAATCACTCGAGCAGCTTCGGCGGTCGCAGTGGAGTTCGAGTGGTGGTCGCCGGCGACCGCGCAACCGGAAAATCAAGCCTGATAGCCGCCATAGCGACGGAGTCATTCGCCGAGGCGGTTCCGCCGGTCCTTCCGCCTACTCTCCTGCCCCCCGATTTGTACCCCGACGCCGTTCCTCTTACCGTCGTTGACACACCTTCCAGCTTGGAGAAGCAGAGAAAGCGTAATGAGGAATTGAAAGGAGCTGATGTTGTGGTGTTAACCTATGCTTGCAATGACACCGCGTCATTTTCGCGGTTGAGTTCTTACTGGTTCCCGGAGCTGCAGAAGTTGGAGGTGAAGGTGCCTGTAATTGTGGTTGGTTGCAAGCTGGATCTTAGGGATGAAAGCCAGGAAGTGAGCTTGGAGCGCGTCATGACACAGCTCCTGCAACAGTTCAAGGAAATTGTCACCTGCATTGAATGCTCTGCTGCTACACAATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTTCATCCAGTGGATCCTTTGTATGATCATGAAAGTCAAGCTTTAAAGGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGAAGCCCTCAATGACACAGAACTAAATGAGTTTCAGGTTAGATGCTTTAATGCACCGTTGCAATCCTCTGAAATAGCAGGAGTCAAAACAGTTGTACAGCAGAAAGTACCTGAAGGATTCAACTCACATGGTCTTACTTTTCCAGGATTTATTTATGTCCACAATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTTCTAAGAGACTTTGGATATGATAATAATTTGAAACTCATGGATGATTTCCTTCCTATTCCATCTAAGCGTGCTTTGGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGACTGTTAGATACAGATAAAGATCGAGCCCTACAACCTGCTGAAGTTGATAAGTTATTTTGCACTGCACCAGAAAGTCCATGGGATGATGCTCTATACAAGGATGCTGCCGAGAGAACTGACATGGGTTACATATCTCTTAATGGATTCCTGGCACAGTGGGCCCTTATGACATTACTTGATCCACCATGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCTGCTGCTGCTCTTCGTGTTACTCGTAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAGGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCTGGGAAGTCTGCTCTGTTGGATTCATCATTGGGAAGGCCTTTCTCAAACAATTATACTCCAACAACAGTTGAGAGGTTTGCAGCAAATTCCATTGAATTAATAGGGGGAACCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAGTGAAATATCAAATGTTTTGTCCAATAAGGATTATTTGGCAGCATGCGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGCTCAACAAGGAGATCTAACTGGTTATAGAGTTCCTTGTCTCCTTATTGCTGCTAAGGATGATTTAACTCCATATCCAAGGGCATTACAAGATTCAGTTAAGGTTACTCAGGAATTGGGAATAGAGGCACCTATTCATGTAAGTATGAAATTAGGCGATTCAAGTAACGTGTACCATAAGATTGTCAATGCTGCAGAGCACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGGAAAAGAAAGCAATGTCATCGGCTTCTTCAGCACTCTCTTGTTTTTGCCTCAGTTGGAACTGCTATGGCAGTTGTTGGTTTGGCAGCATGTCGTGCATATGCAGTTAGAAAGAATTCCTCTGGTTAG 1935 0.4429 MANHSSSFGGRSGVRVVVAGDRATGKSSLIAAIATESFAEAVPPVLPPTLLPPDLYPDAVPLTVVDTPSSLEKQRKRNEELKGADVVVLTYACNDTASFSRLSSYWFPELQKLEVKVPVIVVGCKLDLRDESQEVSLERVMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPVDPLYDHESQALKDRCVRALRRIFVLCDRDMDEALNDTELNEFQVRCFNAPLQSSEIAGVKTVVQQKVPEGFNSHGLTFPGFIYVHNMFLKKGRPETLWAVLRDFGYDNNLKLMDDFLPIPSKRALDQSVELTGEAVEFLNGIFRLLDTDKDRALQPAEVDKLFCTAPESPWDDALYKDAAERTDMGYISLNGFLAQWALMTLLDPPCSLANLIYIGYSGNPAAALRVTRRRAVDRKKQATERNVFQCYVFGSKNAGKSALLDSSLGRPFSNNYTPTTVERFAANSIELIGGTRKTLVLREIPESEISNVLSNKDYLAACDVAVFVYDSSDEHSWKKSRDLLEKVAQQGDLTGYRVPCLLIAAKDDLTPYPRALQDSVKVTQELGIEAPIHVSMKLGDSSNVYHKIVNAAEHPHLSIPETEIGRKRKQCHRLLQHSLVFASVGTAMAVVGLAACRAYAVRKNSSG* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1294 644 SUPERFAMILY EF-hand 194 386 IPR011992 -
Gso3g1294 644 ProSitePatterns EF-hand calcium-binding domain. 327 339 IPR018247 -
Gso3g1294 644 Gene3D - 292 482 - -
Gso3g1294 644 Pfam Ras family 429 554 IPR001806 GO:0003924|GO:0005525
Gso3g1294 644 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Gso3g1294 644 PRINTS Transforming protein P21 ras signature 14 35 - -
Gso3g1294 644 PRINTS Transforming protein P21 ras signature 115 128 - -
Gso3g1294 644 PRINTS Transforming protein P21 ras signature 154 176 - -
Gso3g1294 644 ProSiteProfiles Miro domain profile. 11 178 IPR020860 GO:0003924|GO:0005525
Gso3g1294 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 210 IPR027417 -
Gso3g1294 644 SMART rab_sub_5 14 179 - -
Gso3g1294 644 Pfam EF hand associated 230 313 IPR013567 -
Gso3g1294 644 PANTHER RHO FAMILY GTPASE 5 495 IPR003578 GO:0005525|GO:0007264
Gso3g1294 644 PANTHER MITOCHONDRIAL RHO GTPASE 5 495 - -
Gso3g1294 644 SMART rho_sub_3 16 179 IPR001806 GO:0003924|GO:0005525
Gso3g1294 644 ProSiteProfiles Miro domain profile. 422 591 IPR020860 GO:0003924|GO:0005525
Gso3g1294 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 595 IPR027417 -
Gso3g1294 644 SMART ras_sub_4 15 179 - -
Gso3g1294 644 Pfam EF hand associated 351 418 IPR013566 -
Gso3g1294 644 Gene3D - 488 589 IPR027417 -
Gso3g1294 644 CDD Miro2 421 600 - -
Gso3g1294 644 Gene3D - 11 181 IPR027417 -
Gso3g1294 644 PIRSF Miro 10 644 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Gso3g1294 644 Gene3D - 186 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1294 Gso-Chr3 38688250 38697130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1294 1 642 EF-hand Containing Proteins AT3G63150 58.723 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1294 K07870 - gmx:100803790 1238.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1294 19 41508495 41516731 Gso3g1294 3 38688250 38697130 GST
Gso3g1294 3 38688250 38697130 Gso10g0228 10 2359239 2367857 PCT
Gso10g0228 10 2359239 2367857 Gso3g1294 3 38688250 38697130 PCT