Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0228 ATGGTTTCCCGCTTCGCTACAATGGTGGGCCCCTCCAGCGCCAGCGGCCGTAGGGAAGTTAGAATCGCCGTCGTGGGCGACGGAGCCACCGGAAAATCCACACTCATAGCCGCAATGGCATCGGAGTCTTTCCCCAAGTCCGTTCCGCCCGTGCTTCCCCCCACTCGCTTGCCCCGCAATCTCTTCCCCGATTCCGTTCCTCTTACCCTCATCGACACACCTTCCAGCTTGGCAAAACAAGGCACACGCAATGAAGAATTGAAGCTAGCTGATACAGTGGTTTTAACCTATGCTTGTGATGAACCGGTGAGCTTTGAGCGTGTGACTACTTACTGGCTCCCTGAATTGCACAAGTTGGAGGTGAAGGCACCTGTGATTGTGGTCGGTTGCAAGCTTGACCTGCGGGATGAAAACCAGCTAGTGAGCTTAGAGAGTCTCACCACTCACATAATGAAACAGTTTACTGAAGTTGTCACCTGTGTTGAATGCTCTGCAGCTACACTTTATCAGGTCCCACAAGTTTTTTATTTTGCCCAAAAAGCAGTACTGCATCCAGTAGATCCATTGTTTGATTATGAAAGACATGCTTTAACAGATCGATGTGTGAGGGCGTTAAGAAGAATATTTGTTCTTTGTGATCATGACATGGATGGTGCCCTCAATGATGAAGAACTCAATGAGTTTCAGGTTAGATGCTTCAATGCACCATTGCAACCATTTGAAGTAGCAAATATCAAAACAATTGTAGAGCAGAAAGTACCTGAAGGAGTCAACTCTATTGGTCTTACCTTTCCAGGCTTTATTTATGTCCATAATTTGTTTCTAAAGAAAGGGAGAACAGAGACATTATGGGCTGTTCTAAGAAAGTTTGAATATGATAATGATTTAAAACTCCGGGATGATTTCCTTCCTGTTCCATCCAAGCAGGCTTCTGATCAGAGTGTGGAGCTGACAAGTGAAGCCGTAGAGTTTCTGAATGGTATCTTTCGATTGTTAGATACAGATAAAGATCGATACCTACGACCTGCTGAAGTTGATAAGCTATTTGATATTGCTCCGGAAAGTCCATGGAACGATGCTCCATATAAGGATGCAGCAGAGAAGACTGATATGGGCTATATCTCTCTAAATGGATTTCTGTCTCAGTGGGCCCTCATGACATTACTTGATCCAAAACGTAGCTTGGCAAATTTGATTTACATTGGATATAATGGCAATCCTGCTGAAGCACTCTGTGTCACTCGTAGAAGATCAGTAGATCGCAAGAAGCAAACAACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCGAAACATGCTGGGAAATCTGCTTTGATGTATTCATTACTGGGAAGGCCTTTCTCAAATAATTATACTCCAACAACAGTTGAGCAGTATGCGGCAAATGTCATTGAACTAAAAGGGGTAACTAGGAAAATTCTCATATTGCGTGAGATACCTGAGGATGGACTATTGCAATTTTTGTCAAATCAGGATTGTTTGGCTGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAATATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGTTAGACAAGGAGAACTAACTGGTTATAGAACCCCTTGTCTCCTTATCGCTGCTAAGGATGATTTAGCTCCAGTCCCAAGGACAGTACTAGATTCAGTTAAGGTTACTCAGGCATTGGGAATAAAGGCACCTATTCACGTAAGTATGAAGTTAGGTGATTCAAGTAATGTGTATAATAAAATTGTTAATGCTGCAGAACACCCTCATTTGAGCATTCCAGAAACTGAGACTGCACGGAGAAAGAAGCAACACAACCAGCTTCTTCATCACTCTCTTATTTTTGCCTTAGTTGGGGCTGCTATGGCGGTTGCCGGTTTGACAGCTTGTCGTGTGCGTGCAGTGAAGAAGAATACTGCTGCTTAA 1953 0.4337 MVSRFATMVGPSSASGRREVRIAVVGDGATGKSTLIAAMASESFPKSVPPVLPPTRLPRNLFPDSVPLTLIDTPSSLAKQGTRNEELKLADTVVLTYACDEPVSFERVTTYWLPELHKLEVKAPVIVVGCKLDLRDENQLVSLESLTTHIMKQFTEVVTCVECSAATLYQVPQVFYFAQKAVLHPVDPLFDYERHALTDRCVRALRRIFVLCDHDMDGALNDEELNEFQVRCFNAPLQPFEVANIKTIVEQKVPEGVNSIGLTFPGFIYVHNLFLKKGRTETLWAVLRKFEYDNDLKLRDDFLPVPSKQASDQSVELTSEAVEFLNGIFRLLDTDKDRYLRPAEVDKLFDIAPESPWNDAPYKDAAEKTDMGYISLNGFLSQWALMTLLDPKRSLANLIYIGYNGNPAEALCVTRRRSVDRKKQTTERNVFQCYVFGSKHAGKSALMYSLLGRPFSNNYTPTTVEQYAANVIELKGVTRKILILREIPEDGLLQFLSNQDCLAACDVAVFVYDSSDEYSWKKSRDLLEKVVRQGELTGYRTPCLLIAAKDDLAPVPRTVLDSVKVTQALGIKAPIHVSMKLGDSSNVYNKIVNAAEHPHLSIPETETARRKKQHNQLLHHSLIFALVGAAMAVAGLTACRVRAVKKNTAA* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0228 650 ProSitePatterns EF-hand calcium-binding domain. 213 225 IPR018247 -
Gso10g0228 650 ProSiteProfiles Miro domain profile. 17 184 IPR020860 GO:0003924|GO:0005525
Gso10g0228 650 ProSiteProfiles Miro domain profile. 428 597 IPR020860 GO:0003924|GO:0005525
Gso10g0228 650 PANTHER RHO FAMILY GTPASE 1 499 IPR003578 GO:0005525|GO:0007264
Gso10g0228 650 PANTHER MITOCHONDRIAL RHO GTPASE 1 499 - -
Gso10g0228 650 PIRSF Miro 16 650 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Gso10g0228 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 602 IPR027417 -
Gso10g0228 650 SMART rab_sub_5 20 171 - -
Gso10g0228 650 CDD Miro2 427 606 - -
Gso10g0228 650 Gene3D - 192 296 - -
Gso10g0228 650 Pfam Ras family 435 554 IPR001806 GO:0003924|GO:0005525
Gso10g0228 650 Pfam Ras family 22 182 IPR001806 GO:0003924|GO:0005525
Gso10g0228 650 Pfam EF hand associated 357 424 IPR013566 -
Gso10g0228 650 ProSiteProfiles EF-hand calcium-binding domain profile. 320 355 IPR002048 GO:0005509
Gso10g0228 650 Gene3D - 298 488 - -
Gso10g0228 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 217 IPR027417 -
Gso10g0228 650 Pfam EF hand associated 236 320 IPR013567 -
Gso10g0228 650 Gene3D - 495 595 IPR027417 -
Gso10g0228 650 PRINTS Transforming protein P21 ras signature 20 41 - -
Gso10g0228 650 PRINTS Transforming protein P21 ras signature 121 134 - -
Gso10g0228 650 PRINTS Transforming protein P21 ras signature 160 182 - -
Gso10g0228 650 SUPERFAMILY EF-hand 188 384 IPR011992 -
Gso10g0228 650 SMART rho_sub_3 22 185 IPR001806 GO:0003924|GO:0005525
Gso10g0228 650 Gene3D - 16 187 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0228 Gso-Chr10 2359239 2367857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0228 10 647 EF-hand Containing Proteins AT3G63150 58.621 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0228 K07870 - gmx:100806983 1267.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1294 19 41508495 41516731 Gso10g0228 10 2359239 2367857 PCT
Gso3g1294 3 38688250 38697130 Gso10g0228 10 2359239 2367857 PCT
Gso10g0228 10 2359239 2367857 Gso19g1294 19 41508495 41516731 PCT
Gso10g0228 10 2359239 2367857 Gso3g1294 3 38688250 38697130 PCT