Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1261 ATGAAAAAAGGAAAGGGGAAGAACAACGGCTTATTGCCCAATTCGTTGAGGATTATCTCTCTGTGCCTCAAAACTGTGTCCACCAATGCCACCACCGTTGCTTCCACCGTGCGCTCCGCCGGTGCCTCCGTCGCCGCTTCTATTTCGTCTTCTTCTGAGGATCACAAAGATCAGGTAACCTGGGCTGGTTTTGATACACTGGAGCTTGATCCAGCTAACTTAAAACGTGTTCTTCTACTTGGTTATCTGAATGGATTTCAAGTTCTTGATGTTGAGGATGCCTCTGGCTTCCGTGAACTGGTCTCAAAGCGCGATGGTCCAGTTTCTTTTTTACAGATGCAGCCTTTCCCAGTAGGTTGTGATGGCCAGGAGGGATTCAGGAAGTCGCACCCTTTACTGTTGGTGGTTTCCGGGGATGACACTAGCAATGCAAACCAGAACAGTACCAGTTTGAGTGGTTTAGGAAGGGATGGTAACTTTGAGACTCAACCGGGGAACAATGTCAACTCTTCAACAGTTGTTCGGTTTTACTCCTTGAAGTCTCACTGTTATGTTCATGTTCTGAGGTTCCGTTCAACTGTATGTATGATCAGATGCAGCTCAAGGATAGTAGCGGTTGGTCTTGCCACACAAATATACTGCTTTGATGCTGTGACTCTTGAGAATAAGTTCAGTGTTCTCACTTATCCTGTTTCTCAATTCGCTGGACAAGGAACAACTGGTGTTAATGTTGGTTATGGTCCAATGGCTGTGGGTCCAAGGTGGTTGGCATATGCTTCTAACAACCCCCTGCCCTCTAATTTAGGTTGCTTAAGCCCACAAAACTTCAGTGATTCTCCAGGAATTAGTCCATCAACTTCTCCAAGCAGTGGTAGTTTAGTGGCTCGTTATGCAGTGGAGTCCAGCAGACATTTAGCTGCCGGAATAATCAAATACTGTCAAGAGCTGCTTCCTGATGGTTCCTCTTCTCCCATACAATCAAATTCAGGTGTGAAAGTCAATAGGGTTACAGGAATTGATGCAGATAATGCAGGAATGGTAGTCATTAAGGATTTTGTTTCCAGAAGTATCATATCACAATTCAAAGCTCACACTAGTCCTATATCTGCACTATGTTTTGACCCTAGTGGGACCCTTCTTGTCACTGCATCAGTCTATGGGAATAACATTAATATATTTCGGATAATGCCGTCATTCACATGCAAGAGTTCAGGCATTCCAAGCTCCAATTGGAACTCTTCTCATGTGCATCTTTATAAACTTCATCGTGGAATAACACCAGCTATGATTCAGGACATTTGTTTCAGTAATTTTAGTCAGTGGATTGCAATTGTCTCATCCAAGGGTACTTGTCATCTTTTTGTTTTGTCACCCTTTGGGGGTGATACTGGTTTTCGAATTATTAGTTCTCAGGGTGAAGAACCGTTCCTACTCCCTGTTTTTTCTCTGCCTTGGTGGTATACTCCAGCTTCCATTTCTTATCAGCAATCTCTGCCTCCCCCAGCACCTGTTGTCCTTTCTGTGGCTAGCCGGATAAAATATAGTAGTTTTGGATGGCTTAATACTGTTCACAATTCTTCTGCAAATGTGACAGGAAAAGTTTTTGTGCCATCTGGTGCCATTGCTGCCATCTTTCATAATTCCTTATCTCACTCGCAACAGCTTGTTAACTCAAAGGCAAAACCCTTAGAACATATATTGGTTTATACACCTTCAGGTCATGTAGTTCAACATGAACTTCTGGCATCTGTTGGTTTAGGAACAACTGATAATGGTTTGAGAAACCAGTCAACTTCACTCTTGCATATGCAAGAGGATGAGTTCAGAGTCAAAGTCGAACCTATTCAATGGTGGGATGTATGTAGAAGGTCAGAATGGCCAGAAAGAGGGGATACTTGCTGCAATACCTTTGATAGACAAGGAGGTATTGAGAGAGTTCAAGAGAAAATAAGTTATAGTGATGTCCATGGATTGAATTTTTTGGGCACAAGAGATAGGGCAGGGGAAAAGATGGTAAGATCTTCTAATGAGAATATGCACGACAGGTTTCATTGGTATCTGTCTAATGCGGAGGTGCAAAGGAATTTTGGAAGGTTACCCATATGGCAAAAGTCTAAGATTTGTTGCTATTCAATGAGTTGTGCGGGAGCTAGTTTCAGTGCTACTGGGGAGTTTGAAATTGAAAAGGTCCCTGTTAATGAAGTTGAAATAAAGCGGAAGGAGCTGCTTCCTGTTTTTGACCATTTTCATAGCATCAGATCAAGCGGGAATGAGAGAGGCCTTTCTGGGGAAAGATATTTAAGCCCTATATCTCCTGTTCACAATCAAGCTGATGACAAGGAAACTGTTGATGTAACAGTTATTTGTCATTCAAAGCCAGCATCACTGAGTTCCACTGAAAGCTCCGAAGGAGGTTCATCAAGAAGAATTGAAAATCTGCTTGACTTGGATCAAGTTGCTTCTAGTTATCAAATACTTGGTGAGATATGCCTGGAAAGAACGGGGACAATCAACGTTGAGCCTGCTCTACAAAACCAGATTGTGATGAGTCCATCATGTCTGTCTGGAAACTTGAAACAGGTTGATTTTAACGCTGACCATATTGCCAATCCTATATTACAAGGGAGAAATATAACTTCTGAAGGAAGAGATTCTATAGGTGTTGGGATCAGTGAGAACTCGGCATTGGTCCCAGAACATGATTCACACGAGACTGAATTTGTGGAAGTAGCCTTAACAAAGCAAAATGAAGATGTTGGGATATCTTTCAAGGATGGCCACTGCAAAACACAGGAGCCTGATGAAAGTGACGTGTTAACTGAAGTTGTAACTGATGATGTTGACAGCAGCAGTAGCCACCATGAAAGAGAGCAACTGGAGGAAGATGAGGAGAATGATGAAATGCTTGGTGGCATATTTGCCTTTTCCGAAGAAGGTTGA 2940 0.4265 MKKGKGKNNGLLPNSLRIISLCLKTVSTNATTVASTVRSAGASVAASISSSSEDHKDQVTWAGFDTLELDPANLKRVLLLGYLNGFQVLDVEDASGFRELVSKRDGPVSFLQMQPFPVGCDGQEGFRKSHPLLLVVSGDDTSNANQNSTSLSGLGRDGNFETQPGNNVNSSTVVRFYSLKSHCYVHVLRFRSTVCMIRCSSRIVAVGLATQIYCFDAVTLENKFSVLTYPVSQFAGQGTTGVNVGYGPMAVGPRWLAYASNNPLPSNLGCLSPQNFSDSPGISPSTSPSSGSLVARYAVESSRHLAAGIIKYCQELLPDGSSSPIQSNSGVKVNRVTGIDADNAGMVVIKDFVSRSIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSFTCKSSGIPSSNWNSSHVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFRIISSQGEEPFLLPVFSLPWWYTPASISYQQSLPPPAPVVLSVASRIKYSSFGWLNTVHNSSANVTGKVFVPSGAIAAIFHNSLSHSQQLVNSKAKPLEHILVYTPSGHVVQHELLASVGLGTTDNGLRNQSTSLLHMQEDEFRVKVEPIQWWDVCRRSEWPERGDTCCNTFDRQGGIERVQEKISYSDVHGLNFLGTRDRAGEKMVRSSNENMHDRFHWYLSNAEVQRNFGRLPIWQKSKICCYSMSCAGASFSATGEFEIEKVPVNEVEIKRKELLPVFDHFHSIRSSGNERGLSGERYLSPISPVHNQADDKETVDVTVICHSKPASLSSTESSEGGSSRRIENLLDLDQVASSYQILGEICLERTGTINVEPALQNQIVMSPSCLSGNLKQVDFNADHIANPILQGRNITSEGRDSIGVGISENSALVPEHDSHETEFVEVALTKQNEDVGISFKDGHCKTQEPDESDVLTEVVTDDVDSSSSHHEREQLEEDEENDEMLGGIFAFSEEG* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1261 979 SUPERFAMILY WD40 repeat-like 172 454 IPR036322 GO:0005515
Gso3g1261 979 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 6 978 IPR045142 GO:0006914
Gso3g1261 979 MobiDBLite consensus disorder prediction 140 166 - -
Gso3g1261 979 SMART WD40_4 412 455 IPR001680 GO:0005515
Gso3g1261 979 SMART WD40_4 354 394 IPR001680 GO:0005515
Gso3g1261 979 Pfam Breast carcinoma amplified sequence 3 501 744 IPR022175 -
Gso3g1261 979 Gene3D - 26 472 IPR015943 GO:0005515
Gso3g1261 979 MobiDBLite consensus disorder prediction 923 979 - -
Gso3g1261 979 PANTHER AUTOPHAGY-RELATED PROTEIN 18H 6 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1261 Gso-Chr3 38301395 38307666 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1261 - - gmx:100785780 1822.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1262 19 41168690 41175738 Gso3g1261 3 38301395 38307666 GST