Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1262 ATGAAGAAAGGAAAGGGGAAGAACAACGGCTTGTTGCCGAATTCGTTGAGGATTATCTCTCTATGCCTCAAAACTGTGTCAACGAATGCCACCACCGTTGCTTCCACCGTGCGCTCCGCCGGCGCCTCCCTCGCAGCTTCTATTTCCTCGTCTTCGGAGGATCACAAAGATCAGGTAACCTGGGCTGGTTTTGATACACTGGAGCTTGATTCATCTAACCTCAAACGTGTTCTTTTACTTGGTTATCTGAATGGATTTCAAGTTCTTGATGTTGAGGATGCCTCTGGCTTCAGTGAACTGGTCTCAAAGCGCGATGGTCCAGTTTCTTTTTTACAGATGCAGCCCTTGCCTGTAGGTTGTGATGGTCAGGAGGGATTCAGAAAGTCACACCCTTTACTGTTGGTTGTTTGTGGGGATGACACTAGCAAGGTAAACCACAAAAGTACCAGTTTGAGTGGTGTAGGAAGGGATGGTAATGTTGAAACCCAAACGAGGAACAATGTCAATTCTTCAACCGTTGTTCAGTTTTACTCCTTGAAGTCTCACTCTTATGTTCATGTTCTGAGGTTCCGTTCAACTGTGTGTATGATCAGATGCAGTTCAAGGATAGTAGCGGTTGGTCTTGCAACACAAATACACTGCTTTGATGCTTCGACTCTTGAGAATAAGTTAAGTGTTCTCACTTATCCTGTTACTCAGTTAGCTGGACAAGGAACAACTGGTGTTAATGTTGGTTATGGTCCAATGGCTCTGGGTCGAAGGTGGTTGGCATATGCTTCTAACAGCCCCCTGCCCTCTAATTTAGGTTGCTTAAGCCCACAAAACTTCAGTGCTTCTCCCGGAATTAGTCCATCAACTTCTCCAAGGAGTGGTAGTTTAGTGGCTCGGTATGCAATGGAGTCTAGTAGACATTTAGCTGCCGGAATAATCAAATACTGTCAAGAGCTGCTTCCTGATGGTTCCTCTTCTCCCGTGTCATCAAATTCAGGTGTGAAAGTCGATAGGGTTACAGGAATTGATGCAGATAATGCGGGAATGGTAGTTGTCCAGGATTTTGTTTCTAGAAGTATCATATCACAATTCAAAGCTCACACTAGTCCTATATCTGCACTATGTTTTGACCCTAGTGGGACCCTTCTGGTCACTGCATCAGTATATGGGAATAACATTAATATATTTCGGATAATGCCATCATTCACATGCAAGAGTTCAGCCACTCCAAGCTCCAACTGGAACTCTTCTCATGTGCATCTTTATAAACTTCATCGCGGAATAACACCAGCTATGATTCAGGACATTTGTTTCAGTAATTTTAGTCAGTGGATTGCAATTGTCTCATCCAAGGGTACTTGTCATCTTTTTGTTTTGTCACCCTTTGGGGGTGATACTGGCTTCCAAATTATTAGTTGTCAGGGTGAAGAACCGTCCCTACTCCCTGTTGTTTCTCTGCCTTGGTGGTATACTCCGGCTTCCATTCCTTACCAGCAATCTTTGCCTCCTCCAGCACCTGCTGTTCTTTCTGTGGCTAGCCGGATAAAATATAGTAGTTTTGGATGGCTTAATACTGTTCACAACTCTTCTACAAATGTGACTGAAAAAGTTTTTGTGCCATCTGGTGCCATTGCTGCCATCTTTCACAATTCCTTGTCTCACTCGCAACAGCCTGTTAACTCAAAGGCAAAACCCTTAGAACATATATTGGTATATACACCTTCAGGTCATGTAGTTCAACATGAACTTCTGCCATCTGTTGGTTTAGGAACAACTGATAGTGGTTTGAGAAACCAGTCAACTTCAGTCTTGCATATGCAGGAGGATGAGTTCAGAGTCAAAGTTGAACCTATTCAATGGTGGGATGTATGTAGAAGGTCAGAATGGCCAGAAAGAGGGGATTCTTGCTGCAGTACCTTTGATAGACAAGGAGGTATTGAGGGAGTTCAAGAGAAAATAAGTTATAGTGACTTCCATGGATTGGATTTTGTGGGCTCAAGAGATGAGGCAGGGGAAAAGATGATAAAATCGTCCAGTGAGAATATGCAAGACAGGTTCCATTGGTATCTGTCTAATGCGGAGGTGCAAGGGAACTTTGGAAGGTTACCCATATGGCAAAAGTCTAAGATTTGTTTCTATTCAATGAGTTGTGCAGGAGCTAGTTTCAGTGGTACTGGGGAGTTTGAAATTGAAAAGGTCCCTGCTAATGAAGTTGAAATAAGGCGGAAGGAGCTGCTTCCTGTTTTTGACCATTTTCATAGCATCAGATCAAGCTGGAATGAGAGAGGTCTTGCTGGGGACAGATATTTAAGCTCTACATCTCCTGTTCTCGATCAAGCTGATGACAAGGAAACTGCTGATGTGACAGTTATTTGTCATTCAAAGCCAGCATCACTGAGTTCCACTGAAAGCTCAGAAGGAGGTTCATCAAGAAGAATTGAAAATCTGCTTGACTTGGATCAAGTTGCTTCTAGTTATCAAATACTTGGTGAGATATGCCTGGAAAGAATGGGGACAATCAATGTTGAGCCTTGTCTACAAAACCAGATTGTGATGAGTCCATCATGTCTGTCTGGAAACTTGAAACATGTTGATTTCAACGCTGACCACATTGCCAGTCCTATATTCCAAGGGAGAAATATAACTTCTGAAGGAAGAGATTCTATAGGTGTTGAGATCAGTGAGAACTCAGCATTGGTTCTAGAACATGCTTCACACGAGACTGAATTTGTGGAAGTAGCCTTGGCAAAGCAAAATGAAGGTGTTGGGATATCTTTCAAGGATACCCACTGCAAAACACAGGAGCATGATGGGAGTGACGTGTTAACTGAAGTTGTAACTGATGATGTTGACAGCAGCTGTAGCTACCATGAAAGAGAGCAACTAGAGGAGCATGGGGAGAACGATGAAATGCTTGGTGGCATATTTTCCTTTTCCGAAGAAGTTGCAGACGGTGTAGTATGA 2955 0.4321 MKKGKGKNNGLLPNSLRIISLCLKTVSTNATTVASTVRSAGASLAASISSSSEDHKDQVTWAGFDTLELDSSNLKRVLLLGYLNGFQVLDVEDASGFSELVSKRDGPVSFLQMQPLPVGCDGQEGFRKSHPLLLVVCGDDTSKVNHKSTSLSGVGRDGNVETQTRNNVNSSTVVQFYSLKSHSYVHVLRFRSTVCMIRCSSRIVAVGLATQIHCFDASTLENKLSVLTYPVTQLAGQGTTGVNVGYGPMALGRRWLAYASNSPLPSNLGCLSPQNFSASPGISPSTSPRSGSLVARYAMESSRHLAAGIIKYCQELLPDGSSSPVSSNSGVKVDRVTGIDADNAGMVVVQDFVSRSIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSFTCKSSATPSSNWNSSHVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFQIISCQGEEPSLLPVVSLPWWYTPASIPYQQSLPPPAPAVLSVASRIKYSSFGWLNTVHNSSTNVTEKVFVPSGAIAAIFHNSLSHSQQPVNSKAKPLEHILVYTPSGHVVQHELLPSVGLGTTDSGLRNQSTSVLHMQEDEFRVKVEPIQWWDVCRRSEWPERGDSCCSTFDRQGGIEGVQEKISYSDFHGLDFVGSRDEAGEKMIKSSSENMQDRFHWYLSNAEVQGNFGRLPIWQKSKICFYSMSCAGASFSGTGEFEIEKVPANEVEIRRKELLPVFDHFHSIRSSWNERGLAGDRYLSSTSPVLDQADDKETADVTVICHSKPASLSSTESSEGGSSRRIENLLDLDQVASSYQILGEICLERMGTINVEPCLQNQIVMSPSCLSGNLKHVDFNADHIASPIFQGRNITSEGRDSIGVEISENSALVLEHASHETEFVEVALAKQNEGVGISFKDTHCKTQEHDGSDVLTEVVTDDVDSSCSYHEREQLEEHGENDEMLGGIFSFSEEVADGVV* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1262 984 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 6 978 IPR045142 GO:0006914
Gso19g1262 984 PANTHER AUTOPHAGY-RELATED PROTEIN 18H 6 978 - -
Gso19g1262 984 Pfam WD domain, G-beta repeat 358 386 IPR001680 GO:0005515
Gso19g1262 984 Gene3D - 298 477 IPR015943 GO:0005515
Gso19g1262 984 SMART WD40_4 412 455 IPR001680 GO:0005515
Gso19g1262 984 SMART WD40_4 354 394 IPR001680 GO:0005515
Gso19g1262 984 Pfam Breast carcinoma amplified sequence 3 501 744 IPR022175 -
Gso19g1262 984 SUPERFAMILY WD40 repeat-like 171 457 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1262 Gso-Chr19 41168690 41175738 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1262 - - gmx:100818381 1872.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1262 19 41168690 41175738 Gso3g1261 3 38301395 38307666 GST