Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1259 ATGAAGCGAGTGTGTAGATTCTCTTCTGACGCAACAACGCGAGCAGCTCTGTTGTTGCTCATGCAATCCCATCATAATTTCCATGGATTCTCAAACCCCAAAACCACTTTCTCTCCCTCCTTCGCCACCGCCCTATCTCATCATCGCAATGTTCATACCGTCCCAAACATATACTCTGACATCACTCCCTTGTTCACCGCCAAGTCTTGCTCTTCGCCGAAACAGGATCTCATCAACAAGGTCACGATTCTCAAAAACGAGCTCATTAGAGATTCCTGCGACTCTGCTAGGGTTCAGACCATTTTGGACGATAGTTTCGACACTTTGTTTCGGCGTCACCCCAATGGATCTGCGTTACTCAAGCTTATGAATCAATTGAATTCAAATCCTTCCCTTGCCCTCCAGGTGTTTAGTTGGAGAAGAAAGAGATCGAATGCTGAAAACCCTATGGATGCGTATGAGTACTCAAAGGGTATAAAAGCTGCAGGTAGATCTGGGAATGTTGATTTAGCTGTTAAGCTCTTTAAGGAGGCTGCTGTCAAAGGTATCAAGACGACCGGCACTTACAATGCGCTTATGGGTGCTTTTATGTTCAATGGTCTTCCTGATAACTGTCAGTCTTTGTTTTGTGATTTGAAGAGGGATCTGACTTGCGATCCTTCTATTGCCACGTACAATATTCTTCTATCTGTTTATGGTAGGCTGATGCTCGTTGATCACATGGAAGCAACATTCAGTGAGATACAAAGGTTAAACCTCGCCATGAACATCTGCACTTACAATCACTTGATTGCTGGATATATCACGGCTTGGATGTGGGATGATATGGAAAAGGTGTTTCAAATGCTGAAGTTGAGCTCTGTTGAGCCTAACATGAAAACCCACCTTCTAATGCTTCGTGGGTATGCAAATTCGGGTAATCTTGAAAAGATGGAAGAGATGTATTCCTTTATAAGGGATCATGTTAATATAAAGGAAATTTCATTAATCAGATGTATGATATGTGCCTATTGTAGAAGTTCTCATGCAGATAGACTTAAGAAGATAGAGTTATTGTTGAAGTTTATTCCACAAAAAGAGTACAGGCCATGGTTAAATGTTTTGTTGATTAAACTCTATGCCAAGGAAGACTGGTTAGCGAAAATGGAGAATGCTATAAATGAGGCATTTGAGCATGGGACTTCTATAACAACCAAGGGTATTTTGAGACGCATAATTGCAACTTATTATCGATGTAATGCAGTAGAAAAGCTAGAAAATTTTGTGAGACGTGCGGAAATCTCTGGGTGGAGTATCTGCCGATCCTTATATCATTGTAAGCTAGTCATGTATGGGTCACAGATGACCTTACTCGAAATGCATAATGTCCTTGAAGAGATGGAAAATGTCAAGCTTAAATGCTCAAAGAAAACATTATGGATAATGTACAAAGCTTACATGAGCCGTGGCCAGATTTCCATGGTTTTAAAAACATTGGGACAAATGTTCAAGCATGGATATGAAGTTCCTTTGAGTGCATTTCCATAA 1527 0.408 MKRVCRFSSDATTRAALLLLMQSHHNFHGFSNPKTTFSPSFATALSHHRNVHTVPNIYSDITPLFTAKSCSSPKQDLINKVTILKNELIRDSCDSARVQTILDDSFDTLFRRHPNGSALLKLMNQLNSNPSLALQVFSWRRKRSNAENPMDAYEYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKTTGTYNALMGAFMFNGLPDNCQSLFCDLKRDLTCDPSIATYNILLSVYGRLMLVDHMEATFSEIQRLNLAMNICTYNHLIAGYITAWMWDDMEKVFQMLKLSSVEPNMKTHLLMLRGYANSGNLEKMEEMYSFIRDHVNIKEISLIRCMICAYCRSSHADRLKKIELLLKFIPQKEYRPWLNVLLIKLYAKEDWLAKMENAINEAFEHGTSITTKGILRRIIATYYRCNAVEKLENFVRRAEISGWSICRSLYHCKLVMYGSQMTLLEMHNVLEEMENVKLKCSKKTLWIMYKAYMSRGQISMVLKTLGQMFKHGYEVPLSAFP* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1259 508 Pfam PPR repeat 159 182 IPR002885 -
Gso3g1259 508 PANTHER EXPRESSED PROTEIN 1 507 IPR044179 GO:0003729
Gso3g1259 508 Pfam PPR repeat family 185 231 IPR002885 -
Gso3g1259 508 Pfam PPR repeat family 256 304 IPR002885 -
Gso3g1259 508 Gene3D Tetratricopeptide repeat domain 75 251 IPR011990 GO:0005515
Gso3g1259 508 Gene3D Tetratricopeptide repeat domain 252 321 IPR011990 GO:0005515
Gso3g1259 508 TIGRFAM PPR: pentatricopeptide repeat domain 224 256 IPR002885 -
Gso3g1259 508 TIGRFAM PPR: pentatricopeptide repeat domain 258 291 IPR002885 -
Gso3g1259 508 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Gso3g1259 508 PANTHER OS05G0407900 PROTEIN 1 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1259 Gso-Chr3 38287651 38289792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1259 155 386 Miscellaneous Gene Families AT4G11690 21.702 7.11e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1259 - - gmx:100792116 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1259 19 41149018 41152493 Gso3g1259 3 38287651 38289792 GST