Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1259 ATGAGGCGAGTGTGGAGATTCTCTTCCGACGCAACAAGGCGAGCTCAGTTGTTGTTGCTCTTGCAATCCCATTATTTCCATGGATTCTCAAACCCCAAAACCACTCCCTCTTTGGCCACGGCGCTATCTCATCATCGCAATCTCAATTCCGTGCCAAACGCATACTCTGACCTCATTCCCTTGTTCACTGCCAAGTCTTGCTCTTCAGCCAAAGAGGATCTCATCAACAAGGCCTCCATTCTGAAGAACGAGCTCATACGAGAATCCAGCGACTCTGCTAGGGTTCTGAGCATTTTGGACGATAATTCCGACACTTTGATTCAGCGTCACCCCGATGGATCTGTGTTGCTCAGGCTTATGAATCAATTGAATTCAAATCCTTCCCTTGCCCTCCAGGTGTTTAGTTGGAGAAGAAAGAGATCAAATGTTGAAAACCCTATGGATGCGTATGAGTACTCAAAGGGTATAAAAGCTGCAGGTAGATCTGGGAATGTTGATTTAGCTGTTAAGCTCTTTAAGGAGGCTGCTGTCAAAGGTATCAAGACGACCAGCACTTACAATGCGCTTATGGGTGCTTGTATGTCCAATGGTCTTGCTGATAACTGCCAGTCCTTGTTTTGTGATTTGAAGAGGGATCCAACTTGTGATCCTTCTATTGCCACGTACAATATTCTTCTATCTGTTTTTGGTCGCTTGATGCTGGTTGATCACATGGAAGCAACATTTAGGGAGATACAAAAGTTAACCTTCACCATGAACATCTGCACTTACAATCACATGATTGCTGGATATATCACGGCTTGGATGTGGGATGATATGGAAAATGTGTTTCAAATGTTGAAGAGGAGCCCTGTTGAGCCTAACATGAAAACCTACATGCTAATGCTTCGTGGGTATGCAAATTCAGGTAATCTGGAAAAGATGGAAGAGATATATTCCTTTATAACGGATCGTGTTGATATAAAGGAAATTTCATTAATCAGATGTATGATATGTGCCTATTCTAGAAGTTCTGATGCAGATAGACTTAAGAAGATAGAATTATTGTTGAAGTTTATTCCAGGAAAAGAGTACAGGCCATGGTTAAATGTTTTATTGATTAAACTCTATGCCAAGGAAGACTGGTTAGAGAAAATGGAGAATGCTATAAATGAGGCATTTGAGCATGGGACTTCTATAACAACCAAGGGTATTTTGAGATGCATAGTTGCAACTTATTATCGATACAATGCAGTAGAAAAGCTAGAAAATTTTGTGAGACGTGCTGAAATCTCTGGGTGGAGTATCTGCCGATCCGCATATCATTGTAAGCTAGTCATGTATGGGTCACAGCTGCCCTTAATGCATAATGTCCTTGAGGAGATGGAAATGGTCAACCTTGAATGCACAAAGAAAACATTATGGATAATGTACAAAGCTTACATGAGAAATGGCCAGAGTTCCATGGTTTTAAAAACATTGGGACAAATGTTCAAGCATGGTTATGAAGTTCCTTTGAGTGCATTTCCATCATGA 1515 0.4119 MRRVWRFSSDATRRAQLLLLLQSHYFHGFSNPKTTPSLATALSHHRNLNSVPNAYSDLIPLFTAKSCSSAKEDLINKASILKNELIRESSDSARVLSILDDNSDTLIQRHPDGSVLLRLMNQLNSNPSLALQVFSWRRKRSNVENPMDAYEYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKTTSTYNALMGACMSNGLADNCQSLFCDLKRDPTCDPSIATYNILLSVFGRLMLVDHMEATFREIQKLTFTMNICTYNHMIAGYITAWMWDDMENVFQMLKRSPVEPNMKTYMLMLRGYANSGNLEKMEEIYSFITDRVDIKEISLIRCMICAYSRSSDADRLKKIELLLKFIPGKEYRPWLNVLLIKLYAKEDWLEKMENAINEAFEHGTSITTKGILRCIVATYYRYNAVEKLENFVRRAEISGWSICRSAYHCKLVMYGSQLPLMHNVLEEMEMVNLECTKKTLWIMYKAYMRNGQSSMVLKTLGQMFKHGYEVPLSAFPS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1259 504 Gene3D Tetratricopeptide repeat domain 72 247 IPR011990 GO:0005515
Gso19g1259 504 Gene3D Tetratricopeptide repeat domain 248 316 IPR011990 GO:0005515
Gso19g1259 504 Pfam PPR repeat 156 179 IPR002885 -
Gso19g1259 504 PANTHER EXPRESSED PROTEIN 1 503 IPR044179 GO:0003729
Gso19g1259 504 PANTHER OS05G0407900 PROTEIN 1 503 - -
Gso19g1259 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Gso19g1259 504 Pfam PPR repeat family 253 301 IPR002885 -
Gso19g1259 504 Pfam PPR repeat family 182 229 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1259 Gso-Chr19 41149018 41152493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1259 152 378 Miscellaneous Gene Families AT4G11690 21.304 5.39e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1259 - - gmx:100816768 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1259 19 41149018 41152493 Gso3g1259 3 38287651 38289792 GST