Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1239 ATGATGGAGGAAGAAGAAGACCAGCAGAAGCTTCCAGATCTGGTGAAGGAACTAGTCCACCGCCTCCTCTCCCAAAACCTCCCCCCAAATTCCCCTCCCCTAAACCCTAACTCCCCCGAATTCCGCAACTCCCTCCGCTACGCCCTCCGCATCCTCTCCAGCCGCCTCACCCCCTCCGTCGCCCCCGACGCCGCCGCCATCGCCGACTCCATCAAGCGCCGCCTCGCTACCCACGGCCACTCCTCCGAAGCCCTCTCCTTCGCCGACCTCTTCTCCAAATTCTCCTCCAAAGCCCAAAGCGTCAACAACAAATTCGCCGTCATCTACCTCCTCAAAATCGTCTCCGAAGATCGCCACACCACCACCGCAACCACCACCCCTCTCCTCCCCAACCTCAGTTTCTCCGAACCTACCTCCAACAAAAAACCCTGGAACGACAACGGCGCCCTCCTCATCTCCAAGGACCCCGAGAACCGCCGCGACGTCGCGTTTCGCGAGTTCGTCGATCTAGTCAAGGAAGAAAACGAGGTGTCGGAAGAGGTTCTCGTCCAAGACGTGCTCTATGCTTGCCAAGGAGTGGATGGTAAGTTCGTGAAATTTGACGGCGAGAGTAAGCGTTATGTGATACCTGATTCAATTAGGGTTCCCCGAGCCACTAGGAGTATGGTTTACAATCTCTGTGAATTGGGGGTTTTGTTTAGAAACGTTAGCGGTTACATTTCGCTGAGTATGGATCGGTTTCCCAATGAAGATGTGGGAACTGTGGGCCAGGCTTTTTGCTCCGCTTTGCAGGACGAGCTTAGTGAGTATTATAAGCTGCTGGCGGTTCTTGAGGCTCAGGCTTCCAACCCGATTCCTTTGGTTTCGGAATCCGCGAGCTCCGGGAACTACCTTTCGCTCAGGAGGCTTGCGGTCTGGGTTGCTGAGCCCTTGGTGAAGATGAGGCTGATGGCTGATTTAGTTGAGAAGTGCAGGGTTTTGCGCGGCGGGGCGATGGCGGGGGCGATTCATTTGCACGCGCAGCATGGTGATCCGTTGGTTCATGAGTTCATGAGGAGGTTGCTGCAGAGGGTGTGTTCTTCGCTGTTTGAGATGGTGAGGAGGTGGGTTTTGGAAGGGGAGTTGGAGGATATCTTTGCGGAGTTTTTCATTGTTGGACAGCCTGTGAAGGCTGAGTCCCTCTGGAGAGAAGGGTATAGGCTCCATGATTCCATGCTTCCTTTGTTTATCTCACCTTCGCTTGCACAGAGGATATTGAGGACCGGGAAATCCATTAATTTTCTTCGCGTTTGTTGTGAGGATCATGGTTGGGCTGATGCTGCGACCGAGGTTGTTGCTGATCATGGAGCAACGGCGAGAAGAGGTGGTTTTGGATATGGAGAAACGGATACCCTTGAGTTTTTGGTGGATGAAGCTTCAAAGAGGATTGATAAGCATTTGTTGGATGTGATTTTCAAGAGGTACAAGTTCAAAGAACACTGTCTTGCAATTAAGCAGTATTTGTTGCTTGGGCAAGGTGATTTTGTGCAGTATCTGATGGATATCGTTGGGCCTGAACTTTCTGAGCCGGCTAACACTATAAGCTCTTTTAAACTTTCGGGATTGCTGGAAACTGCAATTCGGGCATCTAATGCTCAGTATGATGATCCTGAAATTTTGGATAGGCTCAGGGTTAAAATGATGCCACATGAAAGCGGTGATAGGGGCTGGGATGTATTTTCACTAGAATACGATGCTAGAGTTCCACTTGATACGGTGTTCACGGAATCTGTGATGGCAAGGTATTTAAGAATTTTTAATTTTCTGTGGAAGCTTAGACGAGTGGAACATGCGCTTACTGGAGCCTGGAAGACCATGAAGCCAAACTGCATTACCTCTAATTCCTTCACCAGATTGCAACATGCAGTAAAGATGCAGTTAGTTTCGACATTGAGGCGCTGTCAGGTTCTGTGGGTTGAAATCAATCACTTCATTTCAAACTTGCAATATTATATAATGTTTGAAGTGTTGGAGGTATCATGGTCAAATTTTTTGGCTGAGATGGAAGTAGCCAAGGATCTTGATGATCTACTTGCTGCTCATGAAAAATATCTGCATTCTATTGTAGAGAAATCTCTCCTTGGAGAGCTTTCCCAGTCTCTTTACAAGTCACTATTTGTAATTTTTGATCTTATATTACGTTTTCGGAGCCGTGCGGATCGGTTGTATGAAGGTATTCATGAGTTGCAAGCAAGATTCACAGAATCCTCCCTATCCTCTCGAGACAAGAATCAATCACGATCTCGAAAGCAACTAAGTGATAAATCTGCAGAACAAGGATCCTGGATTGCTGATGGGAGAAAAGCCCTAACACAACGAGCTGGTGAATTTCTACGAAATATGGAGCAAGATCTGGATGCAATTGCTAAGGAGTATTCATCATTGCAAGAGGGATTCATTTCTCAATTGCCTGTACAGCAGCATGTTGATCTAAAGTTTCTCTTTTTCCGTCTTGACTTCAACGAATTTTATAGGCGGTTGTGTCCTAGCATGTAG 2535 0.4813 MMEEEEDQQKLPDLVKELVHRLLSQNLPPNSPPLNPNSPEFRNSLRYALRILSSRLTPSVAPDAAAIADSIKRRLATHGHSSEALSFADLFSKFSSKAQSVNNKFAVIYLLKIVSEDRHTTTATTTPLLPNLSFSEPTSNKKPWNDNGALLISKDPENRRDVAFREFVDLVKEENEVSEEVLVQDVLYACQGVDGKFVKFDGESKRYVIPDSIRVPRATRSMVYNLCELGVLFRNVSGYISLSMDRFPNEDVGTVGQAFCSALQDELSEYYKLLAVLEAQASNPIPLVSESASSGNYLSLRRLAVWVAEPLVKMRLMADLVEKCRVLRGGAMAGAIHLHAQHGDPLVHEFMRRLLQRVCSSLFEMVRRWVLEGELEDIFAEFFIVGQPVKAESLWREGYRLHDSMLPLFISPSLAQRILRTGKSINFLRVCCEDHGWADAATEVVADHGATARRGGFGYGETDTLEFLVDEASKRIDKHLLDVIFKRYKFKEHCLAIKQYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLSGLLETAIRASNAQYDDPEILDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMARYLRIFNFLWKLRRVEHALTGAWKTMKPNCITSNSFTRLQHAVKMQLVSTLRRCQVLWVEINHFISNLQYYIMFEVLEVSWSNFLAEMEVAKDLDDLLAAHEKYLHSIVEKSLLGELSQSLYKSLFVIFDLILRFRSRADRLYEGIHELQARFTESSLSSRDKNQSRSRKQLSDKSAEQGSWIADGRKALTQRAGEFLRNMEQDLDAIAKEYSSLQEGFISQLPVQQHVDLKFLFFRLDFNEFYRRLCPSM* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1239 844 Coils Coil 791 811 - -
Gso3g1239 844 Coils Coil 260 280 - -
Gso3g1239 844 Pfam Gamma tubulin complex component C-terminal 492 837 IPR040457 GO:0043015
Gso3g1239 844 MobiDBLite consensus disorder prediction 753 772 - -
Gso3g1239 844 Gene3D - 491 836 IPR042241 -
Gso3g1239 844 Pfam Gamma tubulin complex component N-terminal 183 486 IPR041470 -
Gso3g1239 844 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 33 832 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Gso3g1239 844 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 33 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1239 Gso-Chr3 38033898 38037187 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1239 K16570 - gmx:100784710 1644.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1239 3 38033898 38037187 Gso3g1239 3 38033898 38037187 ECH
Gso19g1243 19 40902060 40906603 Gso3g1239 3 38033898 38037187 GST