Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1189 ATGGCTATTGCAGCAGCGGCCGTGGTGGTACCATTGGGCCTGCTCTTCTTCGCCTCCGGCCTCCTTGTTAATCTCATTCAGGCAATATGCTATGTCGTCGTAAGGCCGGTGTCGAAAAGTTTGTACAGAAGGATCAACCGGGTAGTAGCAGAGCTCTTGTGGCTGGAGCTTGTATGGCTTATTGATTGGTGGGCAGGAGTTAAGGTCCAAATATTCACAGATCATGAAACCTTTCGTTTAATGGGTAAAGAGCATGCACTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGCGTTCAGGTTGTCTTGGCAGCACTCTAGCTGTGATGAAGAAATCTTCAAAGTTTCTGCCGGTCATTGGCTGGTCAATGTGGTTTTCTGAGTATCTTTTTCTGGAGAGAAGTTGGGCCAAGGATGAAAGCACATTAAAGTCAGGCATCCAGCGACTGAGTGATTTCCCTCTTCCCTTTTGGCTAGCTCTCTTTGTAGAAGGAACGCGTTTTACACAGGCCAAACTATTAGCTGCTCAGGAATATGCCACTTCCACTGGATTGCCTGTTCCTAGAAATGTTTTGATTCCAAGAACTAAGGGTTTTGTTTCTGCAGTAAGTCATATGCGCTCATTTGTTCCTGCCATTTATGATGTAACAGTAGCCATCCCTAAGAGTTCCCCTGCTCCTACAATGCTAAGACTCTTCAAGGGACAACCTTCAGTGGTGCATGTTCATATCAAGAGGCATTTGATGAAGGAACTGCCAGATACAGATGAGGCTGTTGCTCAATGGTGTCGAGATATATTTGTGGCCAAGGATGCTTTGTTAGACAAACATATGGCTGAGGGTACTTTTAGTGATCAAGAGCTGCAGGATACTGGTCGACCAATAAAGTCTCTTCTGGTAGTTATATCTTGGGCGTGTCTGGTTGTTGCGGGGTCTGTAAAGTTCCTGCAATGGTCTTCGTTACTCTCTTCCTGGAAGGGTGTTGCATTTTCAGCTTTTGGTTTGGCAGTTGTTACTGCACTTATGCAAATTCTGATTCAATTCTCACAGTCAGAGCGTTCAAACCCGGCCAAGATCGTGCCTGCAAAGTCAAAAAACAAGGGGTCTTGA 1134 0.4541 MAIAAAAVVVPLGLLFFASGLLVNLIQAICYVVVRPVSKSLYRRINRVVAELLWLELVWLIDWWAGVKVQIFTDHETFRLMGKEHALVISNHRSDIDWLVGWVSAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERSWAKDESTLKSGIQRLSDFPLPFWLALFVEGTRFTQAKLLAAQEYATSTGLPVPRNVLIPRTKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMLRLFKGQPSVVHVHIKRHLMKELPDTDEAVAQWCRDIFVAKDALLDKHMAEGTFSDQELQDTGRPIKSLLVVISWACLVVAGSVKFLQWSSLLSSWKGVAFSAFGLAVVTALMQILIQFSQSERSNPAKIVPAKSKNKGS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1189 377 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 7 373 - -
Gso3g1189 377 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 44 283 - -
Gso3g1189 377 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-LIKE PROTEIN 7 373 - -
Gso3g1189 377 CDD LPLAT_LCLAT1-like 62 253 - -
Gso3g1189 377 Pfam Acyltransferase 80 228 IPR002123 GO:0016746
Gso3g1189 377 Pfam Acyltransferase C-terminus 239 312 IPR032098 -
Gso3g1189 377 SMART plsc_2 86 208 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1189 Gso-Chr3 37444938 37452185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1189 3 375 Miscellaneous Gene Families AT3G57650 76.944 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1189 K13523 - gmx:100812696 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1189 3 37444938 37452185 Gso3g1189 3 37444938 37452185 ECH
Gso19g1186 19 40274569 40285110 Gso3g1189 3 37444938 37452185 GST
Gso3g1189 3 37444938 37452185 Gso2g1543 2 32816730 32824621 PCT
Gso2g1543 2 32816730 32824621 Gso3g1189 3 37444938 37452185 PCT