Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1120 ATGAAGCTCATTAGCACCATCAACCCCAAAAACCTCAAACTAAGCCCCAAACGCTTCTTTCGTAAAAAGGAACCATCTTTAGTCTCACGCTCCGACCCGCCTTCTTTCGGATCCGGATCCTCTTCCGTTGACTCTTCCACCGCAAATCACAAACCTTCCGCCGGTAACCAAACTCCGACCAGCGTTCTCCCGGACGTCTCCGGCGAGTGGTCCGAGGTCGCCACCGCCGCCGTTGACGTGCGGTGGGACCTCGCGCAGGCCTTACGCCTCATCGATCGCGACAACGACGGCGTCGTCACGCGCCAGGACCTCGAGTCGCTTCTCACGCGCCTTGGCGCGTCGCCGAGCCCCGGCGACGTGGCGCTCATGCTCGGCGAGGTCGACGGCGACGGCATCACGGTTGAGTCTCTCATGAGCTACGTCGGGTCGGGTCTCGAAACTGGGTCGGATCCCGACGAGCTCAAAGAAGCCTTCGAGGTGTTCGACACGGATCGAGACGGGAGGATCTCGGCGGAGGAGCTGCTTAGGGTTTTCAAAGCCATCGGCGACGAACGGTGCACGTTAGAGGAGTGCCGGCGCATGATAGAGGGAGTGGACAGAAACGGGGACGGGTTCGTCTGCTTCGAGGACTTTTCTCGTATGATGGACCTGCAGCGGTGA 660 0.6045 MKLISTINPKNLKLSPKRFFRKKEPSLVSRSDPPSFGSGSSSVDSSTANHKPSAGNQTPTSVLPDVSGEWSEVATAAVDVRWDLAQALRLIDRDNDGVVTRQDLESLLTRLGASPSPGDVALMLGEVDGDGITVESLMSYVGSGLETGSDPDELKEAFEVFDTDRDGRISAEELLRVFKAIGDERCTLEECRRMIEGVDRNGDGFVCFEDFSRMMDLQR* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1120 219 ProSiteProfiles EF-hand calcium-binding domain profile. 186 219 IPR002048 GO:0005509
Gso3g1120 219 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Gso3g1120 219 Gene3D - 138 219 - -
Gso3g1120 219 SUPERFAMILY EF-hand 84 215 IPR011992 -
Gso3g1120 219 Gene3D - 81 137 - -
Gso3g1120 219 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 217 - -
Gso3g1120 219 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Gso3g1120 219 MobiDBLite consensus disorder prediction 23 66 - -
Gso3g1120 219 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 1 217 - -
Gso3g1120 219 MobiDBLite consensus disorder prediction 31 65 - -
Gso3g1120 219 ProSiteProfiles EF-hand calcium-binding domain profile. 83 114 IPR002048 GO:0005509
Gso3g1120 219 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Gso3g1120 219 ProSitePatterns EF-hand calcium-binding domain. 199 211 IPR018247 -
Gso3g1120 219 Pfam EF hand 86 107 IPR002048 GO:0005509
Gso3g1120 219 CDD EFh 153 215 IPR002048 GO:0005509
Gso3g1120 219 Pfam EF-hand domain pair 153 215 IPR002048 GO:0005509
Gso3g1120 219 SMART efh_1 83 111 IPR002048 GO:0005509
Gso3g1120 219 SMART efh_1 153 181 IPR002048 GO:0005509
Gso3g1120 219 SMART efh_1 190 218 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1120 Gso-Chr3 36505177 36506320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1120 10 219 EF-hand Containing Proteins AT3G10190 54.091 1.11e-59 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1120 K13448 - gmx:100790734 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1120 3 36505177 36506320 Gso3g1120 3 36505177 36506320 ECH
Gso19g1114 19 39306918 39308040 Gso3g1120 3 36505177 36506320 GST