Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1114 ATGAAGCTCATTAGCAGCATTAACCCCAAAAATCTCAAACTCAGTCCCAAACGCTTCTTTCGCAAAAAGGAACGATCTTTAGTCTCACGCTCCGACCCACCTTCATTCGGATCCGGATCTTCCTCCGACGACTCCACCACAAATCACAAGCCTTCCGCCGGTAACCAAACTCCGACCAGCGTCCTCCCGGGCGTCTCCGGAGACTGGTCCGACGTCGCCGCCGTCGACGTGCGGTGGGACCTCGCCCAGGCCTTCCGCCTCATCGACCGCGACAACGACGGCGTCGTCACGCGCCAGGACCTCGAGGCCCTCCTCACGTGCCTCGGCGCGTCGCCGTGCCCCGACGACGTGGCGATCATGCTCGGCGAGGTCGACGGCGACGGCATCACCGTAGAAAGGCTCATGAGCTACGTCGGGTCGGGTCTGAAACCCGGGTCGGATCCGGACGAGCTCAAGGAGGCGTTCGAGGTGTTCGACACGGATCGCGACGGGAGGATCTCGGCGGAGGAGCTGCTTAGGGTTTTCAAGGCCATCGGCGACGAGCGGTGCACGTTAGAGGAGTGCCGGCGCATGATAGAGGGTGTGGACAGAAATGGGGACGGGTTCGTCTGCTTCGAGGACTTTTCTCGTATGATGGAGCTGCAGCAGCAGCGATGA 657 0.6149 MKLISSINPKNLKLSPKRFFRKKERSLVSRSDPPSFGSGSSSDDSTTNHKPSAGNQTPTSVLPGVSGDWSDVAAVDVRWDLAQAFRLIDRDNDGVVTRQDLEALLTCLGASPCPDDVAIMLGEVDGDGITVERLMSYVGSGLKPGSDPDELKEAFEVFDTDRDGRISAEELLRVFKAIGDERCTLEECRRMIEGVDRNGDGFVCFEDFSRMMELQQQR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1114 218 ProSitePatterns EF-hand calcium-binding domain. 196 208 IPR018247 -
Gso19g1114 218 Pfam EF-hand domain pair 150 212 IPR002048 GO:0005509
Gso19g1114 218 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Gso19g1114 218 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 1 215 - -
Gso19g1114 218 Gene3D - 136 218 - -
Gso19g1114 218 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 215 - -
Gso19g1114 218 SUPERFAMILY EF-hand 80 212 IPR011992 -
Gso19g1114 218 MobiDBLite consensus disorder prediction 31 64 - -
Gso19g1114 218 Gene3D - 78 135 - -
Gso19g1114 218 ProSiteProfiles EF-hand calcium-binding domain profile. 80 111 IPR002048 GO:0005509
Gso19g1114 218 CDD EFh 150 212 IPR002048 GO:0005509
Gso19g1114 218 ProSiteProfiles EF-hand calcium-binding domain profile. 183 218 IPR002048 GO:0005509
Gso19g1114 218 MobiDBLite consensus disorder prediction 23 65 - -
Gso19g1114 218 CDD EFh 80 176 IPR002048 GO:0005509
Gso19g1114 218 SMART efh_1 150 178 IPR002048 GO:0005509
Gso19g1114 218 SMART efh_1 80 108 IPR002048 GO:0005509
Gso19g1114 218 SMART efh_1 187 215 IPR002048 GO:0005509
Gso19g1114 218 Pfam EF-hand domain 81 109 IPR002048 GO:0005509
Gso19g1114 218 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
Gso19g1114 218 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1114 Gso-Chr19 39306918 39308040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1114 10 216 EF-hand Containing Proteins AT3G10190 54.839 1.05e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1114 K13448 - gmx:100815559 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1114 19 39306918 39308040 Gso3g1120 3 36505177 36506320 GST