Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1109 ATGGCAGCAACAGAGATTGGGTTGTTGGAGTGGGTGAGAGTGGGAGGGGAAGAAGAAGAAGCAGAACAAGCAAAAGGGTGTTTGAGCAAGTTCGTCGATAATGGCAGCGTGGAGAGTCACAGATACTACTTGTCTCGCAGAACCACTCTCGAAATGCTCAAAGACAGAGGCTACTCCATTCCCTCTCACGAAATCGACCTTTCTCTCTCCGATTTCCGCGACATGCACGGCCAATTCCCTGACCCTGATCGTCTTCGTCTCTCCCTCACTCATGCCACCAACTCCTCCAAAAGGATTTTAGTCATATTCTGTGGGCCAGGTGTTGTGAAAGTTACTGCCATTCGGAACATTGCGGGGCAGATAATTAATAGAGATACTTTGACTGGCCTCATATTGATAGTGGAGAATCATATTACTAGCCAGGCCTTGAAAGCGGTCAATCTTTTCTCCTTCAAGGTTGAAATTTTCCAGATCACAGACTTGCTTGTTAATATTACAAAGCATGTATTGAAGCCAAAGCATCAGGTGCTGACTGATAAGCAGAAGATAAATCTCCTGAAGAAGTACAATATCGAAGAAAAGCAGCTTCCCCGCATGCTACAGACAGATGCAATTGCAAGATATTATGGACTTGAGAGGGGGCAAGTAGTTAAAGTTACCTATAGTGGTGAAGTCACCCAGATGCATGTCACATATCGATGTGTTTGGTGA 711 0.4515 MAATEIGLLEWVRVGGEEEEAEQAKGCLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDMHGQFPDPDRLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNIAGQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1109 236 PIRSF RPB5 32 236 IPR014381 -
Gso3g1109 236 Pfam RNA polymerase Rpb5, C-terminal domain 163 235 IPR000783 GO:0003677|GO:0003899|GO:0006351
Gso3g1109 236 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 18 236 - -
Gso3g1109 236 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 36 164 IPR036710 GO:0003677|GO:0003899|GO:0006351
Gso3g1109 236 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 18 236 IPR014381 -
Gso3g1109 236 Pfam RNA polymerase Rpb5, N-terminal domain 38 120 IPR005571 GO:0003677|GO:0003899|GO:0006351
Gso3g1109 236 Gene3D - 33 160 IPR036710 GO:0003677|GO:0003899|GO:0006351
Gso3g1109 236 Gene3D - 161 236 IPR035913 -
Gso3g1109 236 SUPERFAMILY RPB5-like RNA polymerase subunit 161 236 IPR035913 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1109 Gso-Chr3 36316616 36321451 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1109 K03013 - gmx:100306033 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1104 19 39133122 39137124 Gso3g1109 3 36316616 36321451 GST