Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1104 ATGCTCAAAAACAGAGGCTATTCCATTCCCTCTCACGAAATCGACCTTTCTCTCTCTGATTTCCGCAACATGCATGGTCAATCCCCGGACCCTGATCGCCTTCGCCTCTCCCTCACTCATGCCACCAACTCTTCCAAAAGGATTTTAGTCATATTCTGTGAGCCAGGTGTTGTGAAAGTTACTGCCATTCAGAACATTGTGGGGCAGATTATTAATAGAGACACTTTGACTGGCCTCATATTGATAGTGGAGAATCATATTACTAGCCAGGCCTTGAAAGCAGTCAATCTTTTCTCCTTCAAGGTTGAAATTTTCCAGATCACAGACTTGCTTGTTAATATTACAAAGCATGTATTGAAGCCAAAGCAGCAGGTGCTGACTGATAAGCAGAAGAAAAATCTCCTGAAGAAGTACAATATCAAAGAAAAGCAGCTTCCCCGCATGCTACAGACAGATGCAATTGCAAGATATTATGGACTCAAGAGGGGGAAAGTAGTTAAGGTTACCTATAGTGGTGAAATCACCCAGATGCATGTCACATATCGATGTGTTTGGTGA 558 0.4265 MLKNRGYSIPSHEIDLSLSDFRNMHGQSPDPDRLRLSLTHATNSSKRILVIFCEPGVVKVTAIQNIVGQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKQQVLTDKQKKNLLKKYNIKEKQLPRMLQTDAIARYYGLKRGKVVKVTYSGEITQMHVTYRCVW* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1104 185 Pfam RNA polymerase Rpb5, N-terminal domain 1 69 IPR005571 GO:0003677|GO:0003899|GO:0006351
Gso19g1104 185 Gene3D - 1 109 IPR036710 GO:0003677|GO:0003899|GO:0006351
Gso19g1104 185 PIRSF RPB5 1 185 IPR014381 -
Gso19g1104 185 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 1 185 IPR014381 -
Gso19g1104 185 SUPERFAMILY RPB5-like RNA polymerase subunit 110 185 IPR035913 -
Gso19g1104 185 Gene3D - 110 185 IPR035913 -
Gso19g1104 185 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 1 113 IPR036710 GO:0003677|GO:0003899|GO:0006351
Gso19g1104 185 Pfam RNA polymerase Rpb5, C-terminal domain 112 184 IPR000783 GO:0003677|GO:0003899|GO:0006351
Gso19g1104 185 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1104 Gso-Chr19 39133122 39137124 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1104 K03013 - gmx:100306033 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1104 19 39133122 39137124 Gso3g1109 3 36316616 36321451 GST