Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1101 ATGATGGCGCTGCACTCCGTGCCTTCCGTTTCGCACGTGCTGCGCCTCGCCGAGCCATTCCCTTCCCTCCACAACGCTCACGTGCTTCTCGACCTCGCGCCTCTCCGCCGCAAACCTAAGCGCCGCACTCGCAGACTCACGGCGTTTCCCTCGCCGTCGTCTTCGCCGCTCCGTCATTCCGCCGTCAAAGCCGTTCTCCACCTCGACCGCTCCACCGACAACAACCGCCTCCATAATTCCTCTGCTTCGTCTTCTTCCGATTCCAAACCGCAGGTTGCAAACTTGGAGGACATATTATCAGAGAGAGGAGCCTGTGGGGTTGGATTCATTGCCAATTTGGAGAATAAGGGATCACATGAGATTGTCAAGGATGCTTTAAATGCTTTAAGTTGTATGGAACATCGTGGTGGCTGTGGAGCAGATAATGACTCTGGCGATGGTTCAGGGCTGATGACTGGAGTTCCATGGGAACTATTTGACAATTGGGCCAACACGCAAGGGATTGCTTCCTTTGATAAGTCGCACACTGGTGTTGGAATGGTTTTCTTACCCAAAGATGCACAATTTCTCAATGAGGCGAAGAAAGTTATTGTAAATATTTTTCGGCAAGAAGGTCTTGAGGTTCTTGGTTGGAGGCCTGTTCCTGTAAATACTTCTGTAGTAGGTTACTATGCAAAGGAGACCATGCCCAATATACAGCAGGTATTTGTTAAGATTGTGAAAGAAGAAAACGTTGATGACATTGAACGAGAACTGTACATCTGTCGGAAATTGATTGAAAAAGCAGTAAGCTCAGAAAGTTGGGGAAATGAGCTTTATTTCTGTTCTTTATCCAATCAAACCATAATTTACAAGGGGATGCTTCGCTCAGAAGTGCTTGGGTTATTTTATTCTGACCTTCAAAATAATCTTTATAAGTCCCCTTTTGCCATTTATCATCGAAGGTACAGCACAAATACTAGTCCCAGATGGCCTCTTGCACAACCGATGAGGCTTCTTGGTCATAATGGAGAGATCAACACCATACAGGGTAACTTGAATTGGATGCAATCACGAGAACCGTCATTGAAGTCACCTGTATGGCGAGGTCGTGAAAATGAAATTCGTCCATTTGGAAATCCAAAGGCATCAGACTCAGCAAATCTTGACAGTGCTGCAGAATTATTGATAAGAAGTGGTCGAAGTCCTGAGGAAGCTATGATGATTCTTGTTCCAGAGGCTTATAAAAATCATCCAACTCTGTCAATCAAATATCCTGAGGTGGTTGATTTCTATGACTATTACAAGGGTCAGATGGAAGCTTGGGATGGACCAGCCTTGCTTTTGTTCAGTGATGGGAAAACTGTTGGTGCATGCCTTGATCGTAATGGACTTCGACCTGCTAGGTATTGGCGAACATCAGACAATATGGTCTATGTTGCCTCTGAGGTGGGTGTTGTGCCAGTGGATGAGTCAAAGGTTGTCTTGAAAGGCCGTTTAGGTCCAGGCATGATGATAACGGTTGATTTACCTGGCGGTCAGGTCTATGAGAATACAGAGGTTAAAAAACGAGTAGCCTTATCAAGCCCATATGGGAACTGGATCAAGGAAAATTTGCGGTCTTTGAAGCCTGGGAACTTCCTTTCAGCCTCTGTGTTGGACAATGAGGCAGTATTAAGACACCAACAGGCATTTGGGTACTCTAGTGAAGATGTCCAGATGGTGATCGAGAGTATGGCTGCTCAAGGAAAGGAGCCCACGTTTTGCATGGGAGATGATATTCCATTGGCAGCATTGTCTCAGAAACCTCACATGCTTTTTGATTATTTCAAGCAACGGTTTGCACAGGTTACAAATCCTGCAATTGATCCTCTTCGAGAAGGATTGGTTATGTCTCTTGAAGTGAATATTGGGAAGAGAAGGAATATATTGGAAACTGGGCCAGAGAATGCTTCACAGGTTATGTTATCTAGTCCAGTATTGAATGAAGGGGAGCTTGAGTCATTACTAAAAGACTCATACTTGAAACCACAAGTATTACCTACATTTTTTGATATAAGTAAGGGCATTGAAGGTTCCTTGGAGAAAGCATTAAATAAGCTTTGTGAGGCTGCAGATGAAGCTGTCAGAAATGGTTCCCAGCTGCTTATTCTATCAGACCATTCAGAAGCACTGGAACCAACTCATCCTGCAATTCCCATACTCCTTGCTGTTGGTACTGTTCATCAGCATCTAATCCAGAATGGCCTGCGAATGTCAGCTTCAATTGTAGCAGATACTGCTCAGTGCTTTAGCACTCACCAGTTTGCCTGTTTAATAGGATATGGTGCAAGTGCTGTGTGTCCGTACTTGGCATTGGAGACATGTCGGCAATGGCGTTTGAGTAATAAAACTGTAAATCTGATGAGGAATGGAAAGATGCCTACTGTATCGATTGAACAGGCACAGAAGAACTATTGCAAGGCTGTAAAAGCAGGTCTTCTTAAAATTCTTTCCAAAATGGGCATCTCATTGCTATCAAGTTACTGTGGTGCACAAATATTTGAAGTCTATGGATTAGGGAAGGAAGTTGTTGATCTTGCATTCAGAGGAAGTGTGTCGAAAATTGGTGGATTAACTTTTGATGAGGTGGCAAGAGAGACTTTGTCTTTCTGGGTGAAGGCATTCTCTGAAGATACAGCTAAAAGGTTGGAAAATTTTGGATTTATACAGTTCAGACCAGGAGGGGAGTATCATGCAAATAACCCAGAAATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAGAAAAGTCAAAGTGCCTTTTCTGTTTATCAGCAATATTTGGCTAATCGACCTGTGAATGTTCTCCGTGATCTTCTTGAATTCAAAAGTGATCGTGCTCCAATACCTGTGGGGAAGGTTGAACCTGCTTCATCTATTGTGCAACGGTTTTGCACAGGGGGCATGTCACTTGGAGCTATTTCCAGAGAAACTCATGAAGCAATTGCAATTGCCATGAACAGAATAGGTGGAAAATCAAATTCAGGGGAAGGTGGGGAGGATCCTGTTCGCTGGAAACCACTTACAGATGTCGTAGATGGTTACTCTCCAACTCTTCCTCATCTTAAAGGTCTTCAAAATGGGGATACTGCAACTAGTGCCATCAAGCAGGTTGCTTCTGGAAGGTTTGGTGTCACCCCAACATTCTTGGCAAATGCTGATCAGTTAGAAATCAAGATTGCACAAGGTGCAAAACCTGGTGAAGGTGGACAATTGCCTGGAAAAAAAGTTAGCATGTATATTGCTAGGTTGAGAAATTCTAAACCAGGAGTTCCTCTTATATCTCCACCTCCTCATCATGACATTTATTCTATCGAGGACCTTGCTCAGTTGATCTTTGATCTTCATCAGGTGAACCCTAAGGCCAAGGTGTCTGTAAAACTGGTGGCTGAAGCTGGAATTGGCACTGTTGCATCTGGGGTTGCAAAGGGCAATGCTGACATTATACAGATTTCAGGACATGATGGGGGAACAGGAGCAAGCCCTATAAGTTCCATCAAGCATGCAGGAGGTCCTTGGGAACTTGGGCTTACAGAATCTCACCAGACACTCATTGAAAATGGACTTAGAGAAAGGGTTATTCTCAGAGTTGATGGTGGGTTTAGAAGTGGAGTAGATGTCATGATGGCAGCAATAATGGGTGCTGATGAATATGGGTTTGGTTCAGTGGCAATGATTGCTACTGGATGTGTTATGGCCCGCATTTGCCACACCAATAATTGCCCAGTTGGTGTTGCCAGTCAGAGGGAAGAGTTGCGTGCACGCTTTCCTGGTGTTCCTGGGGACCTTGTCAACTACTTTTTGTATGTAGCTGAGGAGGTAAGAGGCATATTGGCACAGCTGGGGTATGAGAAGTTGGATGATGTGATTGGCCGGACTGACTTGTTTCAACCACGAGACATATCTCTAGCAAAAACTCAGCATCTAGATCTGAATTATATCCTCTCTAATGTTGGGTTGCCTAAATGGAGCAGTACCGAAATTAGGAATCAGGAGCCTCATACCAATGGTCCTGTTCTGGATGATGTTTTGCTAGCAGACCCAGAGGTTGCCGATGCCATTGAAAATGAAAAGGTGGTTAATAAGACCATAAAAATATACAACATTGATCGTGCTGTATGTGGACGTATAGCTGGTGTCATTGCAAAGAAGTACGGTGACACTGGTTTTGCTGGACAGTTGAATATAACATTTACAGGAAGTGCTGGGCAGTCATTTGCATGCTTTCTGACTCCTGGAATGAACATTCGCCTTGTTGGAGAGGCTAATGATTATGTTGGGAAGGGCATTGCTGGAGGTGAGTTGGTTATCACTCCAGTCGACAAGACCGGGTTTGAACCTGAGGATGCAGCTATTGTAGGGAACACTTGCTTGTATGGTGCAACTGGTGGACAGGTCTTCGTTAGAGGGAGAGCTGGTGAAAGATTTGCTGTCAGAAACTCACTTGCTGAAGCAGTGGTGGAAGGCGCAGGAGATCATTGTTGTGAGTACATGACTGGTGGCTGTGTGGTTGTCTTGGGAAAAGTGGGTAGAAATGTAGCTGCTGGTATGACTGGAGGGTTGGCTTACATTCTTGATGAGGACGATACTTTCATACCCAAGGTAAACAGAGAAATTGTAAAAATCCAACGGGTGTCAGCCCCTGTTGGACAGATGCAACTGAAGAGCCTGATTGAAGCTCACGTTGAAAAAACCGGTAGTACCAAAGGTGCGGCTATTCTGAAGGACTGGGATAAGTATTTATCACTATTTTGGCAGCTGGTTCCACCTAGTGAAGAAGATACCCCCGAGGCAAATGCCAAATATGACACAACTACGGCAGATCAGGTCACTTATCAGTCTGCTTAG 4866 0.446 MMALHSVPSVSHVLRLAEPFPSLHNAHVLLDLAPLRRKPKRRTRRLTAFPSPSSSPLRHSAVKAVLHLDRSTDNNRLHNSSASSSSDSKPQVANLEDILSERGACGVGFIANLENKGSHEIVKDALNALSCMEHRGGCGADNDSGDGSGLMTGVPWELFDNWANTQGIASFDKSHTGVGMVFLPKDAQFLNEAKKVIVNIFRQEGLEVLGWRPVPVNTSVVGYYAKETMPNIQQVFVKIVKEENVDDIERELYICRKLIEKAVSSESWGNELYFCSLSNQTIIYKGMLRSEVLGLFYSDLQNNLYKSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLKSPVWRGRENEIRPFGNPKASDSANLDSAAELLIRSGRSPEEAMMILVPEAYKNHPTLSIKYPEVVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTSDNMVYVASEVGVVPVDESKVVLKGRLGPGMMITVDLPGGQVYENTEVKKRVALSSPYGNWIKENLRSLKPGNFLSASVLDNEAVLRHQQAFGYSSEDVQMVIESMAAQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRRNILETGPENASQVMLSSPVLNEGELESLLKDSYLKPQVLPTFFDISKGIEGSLEKALNKLCEAADEAVRNGSQLLILSDHSEALEPTHPAIPILLAVGTVHQHLIQNGLRMSASIVADTAQCFSTHQFACLIGYGASAVCPYLALETCRQWRLSNKTVNLMRNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEVYGLGKEVVDLAFRGSVSKIGGLTFDEVARETLSFWVKAFSEDTAKRLENFGFIQFRPGGEYHANNPEMSKLLHKAVRQKSQSAFSVYQQYLANRPVNVLRDLLEFKSDRAPIPVGKVEPASSIVQRFCTGGMSLGAISRETHEAIAIAMNRIGGKSNSGEGGEDPVRWKPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTESHQTLIENGLRERVILRVDGGFRSGVDVMMAAIMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLYVAEEVRGILAQLGYEKLDDVIGRTDLFQPRDISLAKTQHLDLNYILSNVGLPKWSSTEIRNQEPHTNGPVLDDVLLADPEVADAIENEKVVNKTIKIYNIDRAVCGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFACFLTPGMNIRLVGEANDYVGKGIAGGELVITPVDKTGFEPEDAAIVGNTCLYGATGGQVFVRGRAGERFAVRNSLAEAVVEGAGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYILDEDDTFIPKVNREIVKIQRVSAPVGQMQLKSLIEAHVEKTGSTKGAAILKDWDKYLSLFWQLVPPSEEDTPEANAKYDTTTADQVTYQSA* 1622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1101 1621 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 105 504 IPR017932 -
Gso3g1101 1621 MobiDBLite consensus disorder prediction 71 92 - -
Gso3g1101 1621 Pfam Glutamine amidotransferases class-II 105 527 IPR017932 -
Gso3g1101 1621 MobiDBLite consensus disorder prediction 1598 1621 - -
Gso3g1101 1621 Gene3D Aldolase class I 579 1305 IPR013785 -
Gso3g1101 1621 CDD GltS 105 519 - -
Gso3g1101 1621 Gene3D - 1327 1602 IPR036485 GO:0016491
Gso3g1101 1621 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 77 1620 - -
Gso3g1101 1621 Pfam GXGXG motif 1371 1553 IPR002489 GO:0016491
Gso3g1101 1621 Pfam Glutamate synthase central domain 554 846 IPR006982 GO:0006807|GO:0015930
Gso3g1101 1621 MobiDBLite consensus disorder prediction 75 92 - -
Gso3g1101 1621 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 105 641 IPR029055 -
Gso3g1101 1621 MobiDBLite consensus disorder prediction 1606 1621 - -
Gso3g1101 1621 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 105 531 IPR029055 -
Gso3g1101 1621 Pfam Conserved region in glutamate synthase 905 1289 IPR002932 GO:0006537|GO:0015930|GO:0016638
Gso3g1101 1621 SUPERFAMILY FMN-linked oxidoreductases 548 1327 - -
Gso3g1101 1621 CDD GltS_FMN 908 1303 IPR002932 GO:0006537|GO:0015930|GO:0016638
Gso3g1101 1621 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1339 1602 IPR036485 GO:0016491
Gso3g1101 1621 PANTHER FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, CHLOROPLASTIC/MITOCHONDRIAL 77 1620 - -
Gso3g1101 1621 CDD gltB_C 1346 1596 IPR002489 GO:0016491
Gso3g1101 1621 Gene3D Aldolase class I 531 897 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1101 Gso-Chr3 36178942 36206682 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1101 K00284 - gmx:548016 3199.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1101 3 36178942 36206682 Gso3g1101 3 36178942 36206682 ECH
Gso19g1096 19 38987019 39024897 Gso3g1101 3 36178942 36206682 GST