Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1062 ATGGATTCGTTGTGCCTCTCCAACGACTCAGTTGTTTCTGGATTCAAAGACAAGGAGTCAATGGTTGACCCCTTTTTGGTCGAGGCTCTCCAGAACCCTCGTCACCGCCTCACCATTTTGAGGATGGAGCTGGACATCCAGAAGTTTTTGAATAATGCTGATCAGCAGCATTTTGAGTTTCAACATTTCCCTTCTTCCTACCTCCGACTGGCTGCACACCGTGTTGCTCAACACTACAACATGCAAACAATGGTTCAAGATAATGGCTTAGATGGCCAGGGAAGTAAAATTCTGGTGAGGAAGTTACCAGAAAGCAAGTATCCTGTGGTTCGATTATCTGAAATACCTGCTAAGCAGTTGGAAAATGATAAATCTGAGCTGAAAAAATTTGTTATTAGACCTAGGCCCAATAGAAACAGTTTGAATGATGCCAACGGAGTTGGGACGAAAGGAAATCCTGTAAGAAGTGTGGAAGAAAGGAAGGAGGAATATGACCGGGCGCGGGCACGTATCTTTAGTAGCCCTAGAAGCTCTGAATCAGGCGATACCTCATCCATGGTTCCAATGGACGGGAGAAATTCTTCTACTAGCAAGGATGAGAATGAAACTAGCAAGAACCCCATGGCTGATTCAGAAAGATATATCAGTGTCAGGGATAGTTGTTCGACTCGAGTTGCCATACTCAGAGATAGGGAAAAGGATCGCAGTGATCCAGATTATGACCGTAGTTATGGAAGGTATGCTAGGAGTATCCCAGCCTCTGCTGTTAACTTGGTGCCATTTAACTTGCAAAAAGCTCAACCTTCATTTGCTCAATACGATGCTACATTTAACCAGTTGGGTCAGATGTCACAAACTCAAGCCTCACTTGGCTATGCACCTCCTTCAACCCCGATAATGAGTCCTTTTGGCACCCCAGGATTGAATCAGACATCTAGTGAGGGTGCTTACCTACAGTGGCCTAGTGCTGCAATGATGTATGCTCATTCATATGACCAATTTAGACATGGTGTTTTCCAGGCTCCATTTGGTCAACAGCCGTTGAGCTTTGACTATTCACAGAACTATTAG 1071 0.4463 MDSLCLSNDSVVSGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQKFLNNADQQHFEFQHFPSSYLRLAAHRVAQHYNMQTMVQDNGLDGQGSKILVRKLPESKYPVVRLSEIPAKQLENDKSELKKFVIRPRPNRNSLNDANGVGTKGNPVRSVEERKEEYDRARARIFSSPRSSESGDTSSMVPMDGRNSSTSKDENETSKNPMADSERYISVRDSCSTRVAILRDREKDRSDPDYDRSYGRYARSIPASAVNLVPFNLQKAQPSFAQYDATFNQLGQMSQTQASLGYAPPSTPIMSPFGTPGLNQTSSEGAYLQWPSAAMMYAHSYDQFRHGVFQAPFGQQPLSFDYSQNY* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1062 356 ProSiteProfiles R3H domain profile. 36 103 IPR001374 GO:0003676
Gso3g1062 356 Gene3D - 13 135 IPR036867 GO:0003676
Gso3g1062 356 SUPERFAMILY R3H domain 9 137 IPR036867 GO:0003676
Gso3g1062 356 ProSiteProfiles SUZ domain profile. 106 176 IPR024771 -
Gso3g1062 356 CDD R3H_encore_like 35 101 - -
Gso3g1062 356 MobiDBLite consensus disorder prediction 128 216 - -
Gso3g1062 356 MobiDBLite consensus disorder prediction 154 172 - -
Gso3g1062 356 Pfam SUZ domain 128 174 IPR024771 -
Gso3g1062 356 PANTHER OS05G0411600 PROTEIN 5 355 - -
Gso3g1062 356 Pfam R3H domain 38 89 IPR001374 GO:0003676
Gso3g1062 356 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 5 355 - -
Gso3g1062 356 SMART R3H_4 20 102 IPR001374 GO:0003676
Gso3g1062 356 MobiDBLite consensus disorder prediction 173 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1062 Gso-Chr3 35544368 35548371 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1062 - - gmx:100814835 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1062 3 35544368 35548371 Gso3g1062 3 35544368 35548371 ECH
Gso19g1066 19 38462177 38466029 Gso3g1062 3 35544368 35548371 GST