Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1066 ATGGATTCGCCGTGTCTCTCCAACGATTCGGTTTCTGGATTCAAAGACAAGGAGTCAATGGTTGACCCCTTTTTGGTCGAGGCTCTCCAGAACCCTCGTCACCGCCTCACCATTTTGAGGATGGAGCTGGAGATCCAGAAGTTTTTGAATAATGCTGATCAGCTGCATTTTGAGTTTCATCATTTCCCTTCTTCCTATCTCCGACTGGCTGCACACCGTGTTGCTCAACACTACAACATGCAAACAATGGTTCAAGATAATGGCTTAGATGGCCAGGGAAGTAAAATTCTGGTTAGGAAGTTACCTGAAAGCAAGTACCCTGTAGTTCGATTATCCGAAATACCTGCTAAGCAGTTGGAAAATGATAAATCTGAGCAGAAAAAAATTGTTATTAGAACTAGGCCTAATAAAAACAGTTTGAATGATGCTAACGGAGTTGGGAGGAAAGGAAACCCTTTAAGAAGTGTGGAAGAAAGGAAGGAGGAATATGACCGGGCACGGGCACGTATCTTTAGTAGCCCTAGAAGCTCTGAATCAGGTGATACCTCATCCGTGGTTCCAATGGATGGGAGATATTCTTCTACTAGCAAGGATGAGAATGAAACTAGCAAGAACCCCATGGCTGATTCAGAAAGATATATCAGTACCAGGGATAGTTGTTCGACTCGAGTTGCCATACTCAGAGATAGGGAAAAGGATCGTAGTGATCCAGATTATGACCGTAGTTATGGAAGGTATGCTAGGAGTATCCCAACCTCTGCTGTTAACTTGGTGCCATTTAACTTGCAAAAAGCTCAACCTTCATTTGCTCAATATGATGCTACGTTTAATCAGTTAGGTCAGATGTCACAAACTCAGGCCTCACTTGGCTATATACCTCCTTCAACCCCGATAATGGGTCCTTTTGGCACCACAGGATTAAATCAGACATCTAGTGAGGGTGTTTACCTACAGTGGCCTAGTGCTGCAATGATGTATGCACATTCATACGACCAATTTAGACATGCTGTTTTCCAGGCTCCATTTGGTCAACAGCCGTTGAGCTTTGACTATTCACAGAACTATTAG 1068 0.4354 MDSPCLSNDSVSGFKDKESMVDPFLVEALQNPRHRLTILRMELEIQKFLNNADQLHFEFHHFPSSYLRLAAHRVAQHYNMQTMVQDNGLDGQGSKILVRKLPESKYPVVRLSEIPAKQLENDKSEQKKIVIRTRPNKNSLNDANGVGRKGNPLRSVEERKEEYDRARARIFSSPRSSESGDTSSVVPMDGRYSSTSKDENETSKNPMADSERYISTRDSCSTRVAILRDREKDRSDPDYDRSYGRYARSIPTSAVNLVPFNLQKAQPSFAQYDATFNQLGQMSQTQASLGYIPPSTPIMGPFGTTGLNQTSSEGVYLQWPSAAMMYAHSYDQFRHAVFQAPFGQQPLSFDYSQNY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1066 355 CDD R3H_encore_like 34 100 - -
Gso19g1066 355 Pfam R3H domain 37 88 IPR001374 GO:0003676
Gso19g1066 355 SMART R3H_4 19 101 IPR001374 GO:0003676
Gso19g1066 355 Pfam SUZ domain 125 173 IPR024771 -
Gso19g1066 355 PANTHER OS05G0411600 PROTEIN 8 354 - -
Gso19g1066 355 MobiDBLite consensus disorder prediction 120 215 - -
Gso19g1066 355 MobiDBLite consensus disorder prediction 172 193 - -
Gso19g1066 355 Gene3D - 11 136 IPR036867 GO:0003676
Gso19g1066 355 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 8 354 - -
Gso19g1066 355 ProSiteProfiles SUZ domain profile. 105 175 IPR024771 -
Gso19g1066 355 MobiDBLite consensus disorder prediction 152 171 - -
Gso19g1066 355 SUPERFAMILY R3H domain 8 123 IPR036867 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1066 Gso-Chr19 38462177 38466029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1066 - - gmx:100796710 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1066 19 38462177 38466029 Gso3g1062 3 35544368 35548371 GST