Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1043 ATGGCCAAAGGCGTAATCTCGGATGAAGAAGACGACGTCGAACTCGACGAGGAAGAGAGGGAACCCGTCGACGGTGACGAATTGGAAGAGGGTCGCGAGGACAACGAAGACGAGGACGAAGAAGAGGAAGGGCAGGATGAATACGAAAATGATGGGTTTATAGTGGACGACATTGAGGACGAAGAGGAGCAGGATGAAGAAGAAGAGAGAGCAGAAAGTGATGAGGAGCGACCGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAATTGCTGGAGGACAATAATATCAATATCCATCGTCGGAAGGAGAGCAAAAAGTTCAAGCGGCTGAAAAAAGGCAGGAGGGATATTGAGGAGGAGCCCTCTGGGCTGTCTGATGAGGAGGAGCTTGTTGGAAGTGGTAAAGCTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAGCAAGGAGAAGAGGAAGAGGATGCTGACATTGGAGAAGATGATGAAATGGCTGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGGGCTCCTATGAGGCAGAGGAAGCTGAAGAAAAAGAAAACTAGGCAGGCTCCTGGAGTCTCTTCTTCAGCTCTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTCTGAATCGCCAGAAAAATCTAGAAATGAGTGAATTTAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTTTCTGAGAAATATATGACAGAGAAGGATGACTGGATTAGGGAGCTTGATATTCCTGAGAGAATGCAGGTATCTGATGAAAGTACTGGTACTCCTCCGGTGGATGCAAGTAGTATAGATGAAGAGAGTCAATGGATTTGTAAGCAACTTAAAAATGGAACAATTCCTTGGATTCCCAAGAAGATTTCAAACTCCCAGAATAATGAAGAGGATGACCTACCAGTTGACAAGGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAGTTAGATATTCCTTTTATTGCTATGTATCGGAAGGAGGACTGCTTAAGCCTATTAAAAGACCTAGAGCACCCTGAAGCTGGTGATGATAATTGGGATAAGAATGACAAGACACCTACTCTGAAATGGCACAAGGTACTTTGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTCCAGTCATACTATAATAAACGGTTTGAAGAAGAGTCCCGTCGTGTGTATGATGAAACAAGACTAAACTTGAATCGTCAATTGTTTGAATCAGTTATGAGATCGCTGAAGGAAGCAGGATCTGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCAGGCGAAGCTGGTGTTGATGAAGGACAATACAAGAGGCCAAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCTGGTCTTTGGGAGGTTGCAAGCAGGTTTGGGTGTAGTCCTGAGCAACTTGGATTATGCCTAACTGAAGTTAACCTGCAAGAGTTGGAAGATCCAAAGGAAACACCAGAAGAGATGGCTTCTAACTTTACATGTGCTATGTATGATACCCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCTGCTGTTGAGATAAGTTGTGAGCCTAGCATTAGGAAACATGTTCGCAGCCACTTTCTTGACCATGCAGTTGTGTCAACTTGTCCTACTGCTGATGGAAATACAACAATAGATTCTTTCCATCAGTTTGCTGGGGTGAAGTGGCTGCGGGAGAAGCCTTTGTCTAAGTTTGAAGATGTGCAATGGCTCCTTATACACAAGGCAGAAGAGGAGAAACTCATTCAAGTTACTATTAAACTGCCTGAGCAGTATCTTAATAAGTTAATAGACCAATTCAATGAATATTATATTAGTGACAGTGTTAGCAGATCTGCTCAGCTGTGGAATGATCAGAGGAAGTTGATACTGCATGATGCCATTTTTCGATTCCTTTTACCTTCAATGGAAAAAGAGGCAAGAGGTGTCCTGGCAAGTAAAGCCAAGAATTGGTTACTTATGGAATATGGGAAGGCCTTATGGACTAAGGTTGCCGTGGGACCTTACCAACAGAAGGAAAATGATCTTGGCTCAGATGATGAGGCTGCTCCTCGGGTTATGGCATGCTGTTGGGGCCCTGGAAAGCCGCTAACAACTTTTGTCATGTTAGATTCATCGGGTGAAGTGCTTGATGTTCTTTACACTGGGTCACTTACTTTTAGGTCCCAGAATGTTAATGACCAACAACGGAAGAAGAATGACCAGGAACGGGTGTTAAAGTTTATGACCGATCACCAACCGCATGTTGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACCCGTTTGAAGGAAGATATATACGAGGTCATTTTTAAGATGGTGGAGGAAAATCCTAGAGATGTTGGGCACGAAATGGATGGGCTCAGCATTGTCTATGGAGATGAATCTCTTCCTCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCACAACAAGGTATAGTGAGGCGAGCAGTTGCTCTTGGACGTTATCTCCAGAACCCATTGGCAATGGTTGCAACATTATGTGGACCTAGAAAGGAAATATTGTCATGGAAACTGAGCCCTTTGGAGAGTTTTCTCAACCCAGATGATAAATTTGCAATGGTTGAGCAGATTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAATGGTTATTTGCTCCATTACAATTTATTTCTGGGCTTGGTCCACGGAAGGCTGCATCCTTACAGAGATCCCTTGTAAGAGCTGGTGCAATTTTTACTCGGAAGGACTTTCTGACTGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGTTTAGCTGCTAGCAGCAGCCAATTTATCGATTTGCTGGATGATACAAGAATTCATCCTGAATCTTATATTCTTGCACAAGAGTTGGCCAAAGATGTGTATGAAGAAGATGGCACAGGTGATGCAAATGATGATGATGATGCACTGGAGATGGCCATAGAGCATGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTTCTGGGAAAAAACGTCAGAACAAAATACAAACTTTCTATGACATAAAAAGAGAATTGATTCAAGGTTTTCAGGATTGGCGTAAGCAATATGAAGAACCAAGTCAAGATGAGGAATTCTATATGATTTCAGGTGAGACTGAAGAGACCCTTGCTGAAGGCAAAATCGTTCAAGTCACAGTTCGGAGAGTGCAAGCCCAGAAAGCAATATGTGGGCTTGAATCTGGAATGACCGGAATCCTCTTGAAAGAAGACTATACAGATGACTGGAGAGATGTAATTGAATTGTCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATTAAGTCAATTCAAAAGAATAGGTATCAAGTCTTCCTTGTATGTAAGGATAGTGAAATGAGAAGTAATCGGTTACAGAATAACCGTGATATTGACCCTTATTACCATGAGGACCGGAGCTGTTTTCAGAGTGATCAAGACAAAGCTCGGAAAGAAAAGGAGCTTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCCGATGAAGCAATGGAGTTCTTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGAGGACCTTCATATCTTACTTTAACTCTTAAAATTAATGATGGAGTATATGCCCATAAGGATATAGTTGAAGGTGGGAAGGAACACAAGGACATAACAAGCTTACTCCGAATCGGGAAGACACTAAAAATTGGAGAGGACACTTTTGAGGACTTAGATGAGGTTATGGACCGCTATGTTGATCCCTTGGTGGCTCACTTAAAGTCAATGTTAAACTATCGCAAATTCCGAAAGGGTACAAAAGCAGAAGTTGATGAACTTTTGAGGATGGAGAAAGCTGAGTATCCTATGCGCATAGTCTATAGTTTTGGCATCTCCCATGAACATCCTGGCACATTTATATTAACTTATATAAGAAGTACAAATCCACACCATGAGTACATTGGGCTTTACCCAAAAGGATTCAGGTTTAGGAAAAAGATGTTTGAGGACATTGATAGGCTTGTAGCATATTTTCAGAGACATATTGATGATCCCCAGCATGATTCAGCCCCTTCCATTAGATCTGTTGCTGCTATGGTACCAATGCGAAGCCCTGCAGCTGGTGGCTCATCAGGGGCATCTGTGGGTAGTGGCTGGGGTGGTGGCTCAAACAGTGAGGGTGGTGGCTGGAGAGGTCACTCTTATGATAGGGGGGATCGATCATCTACACCTGGTTCCAGGACAGGACGGGGTGAATACAGAAACAATGGGAATCAGGACGAACATCCTAGTGGAGTGCCTCGTCCATATGGTGGTGGAAGAGGGCGTGGACGTGGTCGTGGTCGAGGTTCTTATAACAATAGAGGAGACAACTCCAATAATGAAAGGCAGGACTCTGGTTATGGGGGCAGATGGGGTTCTAATAATACAAAGGACTCGGATGATGGTTTAAGCAATTTTCCAGGGGCCAAGGTTCAGAATTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGTGGTGGTGGAAGCGGTGGAGGCAGTAGTGGTTGGGGAGGGGGAGGAGGTGGAGCTAGTAACAGTGACAATGGTGGCTGGGGGGGACAAGCGAGTGGTGGTGCTGGTCCAAGTGATGGTGAACAAGGAAGCTCTGGCTGGGGATCTGCCCCCAAGAAAGCAGCATCAGGGAACGGATGGGGATCTGGAAATTCTGGCGGCCGTGGTTGGTGA 4992 0.4379 MAKGVISDEEDDVELDEEEREPVDGDELEEGREDNEDEDEEEEGQDEYENDGFIVDDIEDEEEQDEEEERAESDEERPKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDIEEEPSGLSDEEELVGSGKAGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEFRETRLEDEFEPIVLSEKYMTEKDDWIRELDIPERMQVSDESTGTPPVDASSIDEESQWICKQLKNGTIPWIPKKISNSQNNEEDDLPVDKDDIIRFLELHHVQKLDIPFIAMYRKEDCLSLLKDLEHPEAGDDNWDKNDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALQSYYNKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAGSEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLTEVNLQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTTIDSFHQFAGVKWLREKPLSKFEDVQWLLIHKAEEEKLIQVTIKLPEQYLNKLIDQFNEYYISDSVSRSAQLWNDQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWTKVAVGPYQQKENDLGSDDEAAPRVMACCWGPGKPLTTFVMLDSSGEVLDVLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFAMVEQIMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKKRQNKIQTFYDIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILLKEDYTDDWRDVIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNRDIDPYYHEDRSCFQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKINDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKSMLNYRKFRKGTKAEVDELLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGASVGSGWGGGSNSEGGGWRGHSYDRGDRSSTPGSRTGRGEYRNNGNQDEHPSGVPRPYGGGRGRGRGRGRGSYNNRGDNSNNERQDSGYGGRWGSNNTKDSDDGLSNFPGAKVQNSPGREAFPGGWGGGGGSGGGSSGWGGGGGGASNSDNGGWGGQASGGAGPSDGEQGSSGWGSAPKKAASGNGWGSGNSGGRGW* 1664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1043 1663 PIRSF Spt6 3 1507 IPR017072 GO:0032968
Gso3g1043 1663 SUPERFAMILY Ribonuclease H-like 741 896 IPR012337 -
Gso3g1043 1663 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1660 - -
Gso3g1043 1663 Gene3D - 1010 1102 IPR042066 -
Gso3g1043 1663 SUPERFAMILY SH2 domain 1254 1340 IPR036860 -
Gso3g1043 1663 SMART rnase_8s 741 859 IPR006641 GO:0006139
Gso3g1043 1663 SUPERFAMILY Nucleic acid-binding proteins 1124 1204 IPR012340 -
Gso3g1043 1663 Gene3D - 731 1121 IPR037027 GO:0006139
Gso3g1043 1663 MobiDBLite consensus disorder prediction 1495 1516 - -
Gso3g1043 1663 Gene3D - 498 934 IPR023323 -
Gso3g1043 1663 Gene3D - 294 497 IPR023319 -
Gso3g1043 1663 Gene3D - 262 1004 - -
Gso3g1043 1663 MobiDBLite consensus disorder prediction 163 199 - -
Gso3g1043 1663 CDD SH2_Cterm_SPT6_like 1349 1436 IPR035018 -
Gso3g1043 1663 ProSiteProfiles S1 domain profile. 1129 1200 IPR003029 GO:0003676
Gso3g1043 1663 CDD SH2_Nterm_SPT6_like 1251 1339 IPR035019 -
Gso3g1043 1663 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1660 IPR017072 GO:0032968
Gso3g1043 1663 Gene3D SH2 domain 1237 1348 IPR036860 -
Gso3g1043 1663 MobiDBLite consensus disorder prediction 139 161 - -
Gso3g1043 1663 Gene3D - 1122 1210 IPR012340 -
Gso3g1043 1663 SMART S1_6 1127 1200 IPR022967 -
Gso3g1043 1663 MobiDBLite consensus disorder prediction 1539 1579 - -
Gso3g1043 1663 MobiDBLite consensus disorder prediction 1458 1663 - -
Gso3g1043 1663 MobiDBLite consensus disorder prediction 73 92 - -
Gso3g1043 1663 Pfam Acidic N-terminal SPT6 34 124 IPR028083 -
Gso3g1043 1663 Gene3D SH2 domain 1349 1445 IPR036860 -
Gso3g1043 1663 Pfam Holliday-junction resolvase-like of SPT6 740 896 IPR028231 -
Gso3g1043 1663 SUPERFAMILY RuvA domain 2-like 912 1002 IPR010994 -
Gso3g1043 1663 Coils Coil 55 75 - -
Gso3g1043 1663 Pfam HHH domain 1016 1103 IPR041692 -
Gso3g1043 1663 SUPERFAMILY Tex N-terminal region-like 337 719 - -
Gso3g1043 1663 SUPERFAMILY RuvA domain 2-like 1015 1104 IPR010994 -
Gso3g1043 1663 Pfam Helix-hairpin-helix motif 900 1001 IPR032706 -
Gso3g1043 1663 MobiDBLite consensus disorder prediction 9 72 - -
Gso3g1043 1663 MobiDBLite consensus disorder prediction 1630 1644 - -
Gso3g1043 1663 Pfam SH2 domain 1218 1435 IPR035420 -
Gso3g1043 1663 MobiDBLite consensus disorder prediction 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1043 Gso-Chr3 35197826 35206992 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1043 K11292 - gmx:100808591 3002.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1043 3 35197826 35206992 Gso3g1043 3 35197826 35206992 ECH
Gso19g1056 19 38287790 38297506 Gso3g1043 3 35197826 35206992 GST