Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1056 ATGGCCAAAGGCGTAATCTCAGACGAAGAAGACGACGTCGAACTCGACGAGGAAGAGAGGGAACCCGTCGACGGTGACGAATTGGAAGAGGGTCGCGATGTAGACAACGAAGAAGAGGACGAAGAAGAGGAAGGGCAGGATGAATATGAAAACGATGGGTTTATAGTGGACGACATTGAGGACGAAGAGGAGGAGGATGAAGAAGAAGAGAGAGCAGAAAGTGATGATGAGCGACAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAATTGCTGGAGGACAATAATATCAATATTCATCGTCGGAAGGAGAGCAAAAAGTTCAAGCGGCTGAAAAAAGGCAGGAGGGATACCGAGGAGGAGCCCTCTGGGCTGTCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAGCAAGGAGAAGAGGAAGAGGATGCAGACATTGGAGAAGATGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGGGCTCCTATGAGGCAGAAGAAGCTGAAGAGAAAGAAAACTAGGCAGGCTCCTGGAGTCTCTTCTTCAGCTCTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTCTGAATCGCCAGAAAAATCTAGAAATGAGTGAATTTAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTTTCTGAGAAATATATGACAGAGAAGGATGACCGGATTAGGGAGCTTGATATTCCCGAGAGAATGCAGATATCAGATGAGAGTACTGGTGCTCCTCCGTTGGATGCAAGTAGTATAGATGAAGAGAGTCAATGGATTTGCAAGCAACTTAAAGATGGAGCAATCTCTTGGATTCCCAAGAAGATTTCAAACTCCCAGAATAATGAAGAGGATGACTTACCAGTCGACAAGGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAATTAGATATTCCTTTTATTGCTATGTATCGGAAGGAGGACTGCTTAAGCCTATTAAAAGACCTAGAGCACCCTGAAGCTGGTGATGATAATTGGGATAAGAATGACAAGACACCTACTCTGAAATGGCACAAGGTACTTTGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTCCAGTCATACTATAATAAACGGTTTGAAGAAGAGTCCCGTCGTGTGTATGATGAAACAAGACTAAACTTGAATCGTCAATTGTTTGAATCAGTTATGAGATCGCTGAAGGAAGCAGGATCTGAGAAGGAGATTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCTGGCGAAGCTGGTGTTGATGAAGGACAATACAAGAGGCCTAAAAGGAAGTCTATGTATAGCACTTTCAGTAAGGCTGGTCTTTGGGAGGTTGCAAGCAGGTTTGGATGTAGTCCTGAGCAACTTGGATTATGTCTAACTGAAGTTAACCTGCAAGAGTTGGAAGATCCAAAGGAAACACCAGAAGAGATGGCTTCCAACTTTACATGTGCTATGTATGATACCCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCTAGCATTAGGAAATATGTACGTAGCCACTTTCTTGATCATGCAGTTGTCTCAACTTGTCCTACTGCTGATGGAAATACAACAATAGATTCTTTCCATCAATTTGCTGGGGTGAAGTGGCTGCGGGAGAAGCCTTTGTCTAAGTTCGATGATTTGCAATGGCTCCTTATACAGAAAGCAGAAGAGGAGAAACTCATTCAAGTTATTATTAAACTGCCTGAGCAGTATCTTAATAAGTTAATAGACCAATTCAATGAATATTATATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGATCAGAGGAAATTGATACTGCATGATGCCATTTTTCGATTCCTTTTACCATCAATGGAAAAAGAGGCAAGAGGTGTCTTGGCAAGTAAAGCAAAGAATTGGTTACTTATGGAATACGGGAAAGCCTTATGGACTAAGGTTTCTGTGGGACCTTATCAACAGAAGGAAAATGATCTTGGCTCAGATGATGAGGCTGCTCCTCGGGTTATGGCGTGCTGTTGGGGCCCTGGAAAGCCACTAACAACTTTTGTCATGTTAGATTCATCAGGTGAAGTGCTTGATGTGCTTTACACTGGGTCACTTACCTTTAGGTCACAGAATGTTAATGACCAACAACGGAAGAAGAATGACCAGGAACGGGTGTTGAAGTTTATGACCGATCACCAACCACATGTTGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACCCGTTTGAAGGAAGATATATATGAGGTCATTTTTAAGATGGTGGAGGAAAATCCTAGAGATGTTGGGCATGAAATGGATGGGCTCAGCATTGTCTATGGGGATGAATCTCTTCCTCGTCTTTATGAAAATTCTAGAATTTCCTCTGAACAACTTCCTTCTCAACAAGGTATAGTGAGGCGAGCTGTTGCTCTTGGACGTTATCTCCAGAACCCATTGGCAATGGTTGCAACATTATGTGGACCTAGAAAGGAAATACTGTCATGGAAACTGAGCCCTTTGGAGAGTTTTCTCAACCCGGATGATAAATTTGCAATGGTCGAGCAGGTTATGGTAGATGTCACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAATGGTTATTTGCTCCGTTACAATTTGTTTCTGGGCTTGGTCCACGGAAGGCTGCATCCTTACAGAGATCCCTTGTAAGAGCTGGTGCAATTTTTACTCGGAAGGACTTTCTGACTGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGTTTAGCTGCTAGCAGCAGCCAATTTATTGATTTGCTGGATGATACACGAATTCATCCTGAATCTTATATTCTTGCACAAGAGTTGGCCAAAGATGTGTATGAAGAAGATGGCACAGGTGATGCAAATGATGATGATGATGCACTGGAGATGGCCATAGAGCATGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGCAATATGCTTCTGGGAAAAAACGTCAGAATAAAATACAAACTTTCTATGACATAAAAAGAGAATTGATTCAAGGTTTTCAGGATTGGCGTAAGCAATATGAAGAACCAAGTCAAGATGAGGAATTCTATATGATTTCAGGTGAGACTGAAGAGACCCTTGCTGAAGGCAAAATCGTCCAAGTCACAGTTCGCAGAGTGCAAGCCCAGAAAGCAATATGCGGGCTTGAATCTGGAATGACTGGAATCCTCTTGAAAGAAGACTATACAGATGACTGGAGAGATATAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATTAAGTCAATCCAAAAGAATAGGTATCAAGTCTTCCTTGTATGTAAGGATAGTGAAATGAGAAGTAATCGGTTACAGAATAACCGTGATATTGACCCCTATTACCATGAAGACCGAAGCTGTTTTCAGAGTGATCAAGACAAAGCTAGGAAAGAAAAGGAGCTTGCAAAAAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATAGAGTTCTTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGAGGACCTTCATATCTTACTTTAACTCTCAAAATTAATGATGGAGTATATGCCCATAAGGATATAGTTGAAGGTGGGAAGGAACACAAGGACATTACAAGCTTACTCCGAATTGGGAAGACACTAAAAATTGGAGAGGACACTTTTGAGGACTTAGATGAGGTTATGGACCGCTATGTTGATCCCTTGGTGGCTCACTTAAAGGCAATGTTAAACTATCGCAAATTCCGAAAGGGTACAAAAGCAGAAGTTGATGAACTTTTGAAGATGGAGAAAGCCGAGTATCCGATGCGCATAGTCTATAGTTTTGGCATCTCCCATGAACATCCTGGCACATTTATATTAACTTACATAAGAAGTACAAATCCACACCATGAGTACATTGGGCTTTACCCAAAAGGATTCAGGTTTAGGAAAAAGATGTTTGAGGACATCGATAGGCTTGTAGCATATTTTCAGAGGCATATTGATGATCCCCAGCATGATTCAGCCCCTTCGATTAGATCTGTGTCTGCTATGGTACCAATGCGAAGCCCTGCAACTGGTGGCTCATCTGGGGCATCTGGGGGTAGTGGTTGGGGTGGTGGTTCAAACAGTGAGGGTGGCTGGAGAGGTCACTCTTATGATAGGGGGGATCGATCATCTACTCCTGGTTCCAAGACAGGACGAGGTGAATACAGAAACAATGGGAATCAGGACGAACATCCTAGTGGAGTGCCTCGTCCATATGGTGGTGGACGAGGACGTGGTCGTGGCCGAGGTTCTTATAATAATAGAGGAGACAACTCCAATAATGAAAGACAGGACTCTGGTTATGGGGGCAGATGGGGTTCTAATAATACAAAGGATTCTGATGATGGTTTAAGCAATTTTCCAGGGGCCAAGGTTCAGAATTCTCCTGGAAGAGAAGCTTTTCCTGGTGGTTGGGGTGGTGGTGGAAGCGGTGGAGGTGGAGCTAGTAACAGTGACAATGGTGGCTGGGAACAAGCAAGTGGTGGTGCTGGTCCAAGTGATGGTGAACAAGGAAGCTCTGGCTGGGGATCTGCCACAAAGAAAGCAGCATCTGGGAACGGATGGGGGTCTGGAAATTCTGGCGGTGGTTGGTGA 4950 0.4305 MAKGVISDEEDDVELDEEEREPVDGDELEEGRDVDNEEEDEEEEGQDEYENDGFIVDDIEDEEEEDEEEERAESDDERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQKKLKRKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEFRETRLEDEFEPIVLSEKYMTEKDDRIRELDIPERMQISDESTGAPPLDASSIDEESQWICKQLKDGAISWIPKKISNSQNNEEDDLPVDKDDIIRFLELHHVQKLDIPFIAMYRKEDCLSLLKDLEHPEAGDDNWDKNDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALQSYYNKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAGSEKEIDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLTEVNLQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKYVRSHFLDHAVVSTCPTADGNTTIDSFHQFAGVKWLREKPLSKFDDLQWLLIQKAEEEKLIQVIIKLPEQYLNKLIDQFNEYYISDSVSRSAQLWNDQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWTKVSVGPYQQKENDLGSDDEAAPRVMACCWGPGKPLTTFVMLDSSGEVLDVLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFAMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFVSGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEQYASGKKRQNKIQTFYDIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILLKEDYTDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNRDIDPYYHEDRSCFQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAIEFLSDKDPGESIIRPSSRGPSYLTLTLKINDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFRKGTKAEVDELLKMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVSAMVPMRSPATGGSSGASGGSGWGGGSNSEGGWRGHSYDRGDRSSTPGSKTGRGEYRNNGNQDEHPSGVPRPYGGGRGRGRGRGSYNNRGDNSNNERQDSGYGGRWGSNNTKDSDDGLSNFPGAKVQNSPGREAFPGGWGGGGSGGGGASNSDNGGWEQASGGAGPSDGEQGSSGWGSATKKAASGNGWGSGNSGGGW* 1650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1056 1649 Gene3D - 1011 1103 IPR042066 -
Gso19g1056 1649 Pfam Helix-hairpin-helix motif 901 1002 IPR032706 -
Gso19g1056 1649 MobiDBLite consensus disorder prediction 164 200 - -
Gso19g1056 1649 Pfam SH2 domain 1219 1436 IPR035420 -
Gso19g1056 1649 MobiDBLite consensus disorder prediction 1495 1516 - -
Gso19g1056 1649 MobiDBLite consensus disorder prediction 1617 1649 - -
Gso19g1056 1649 MobiDBLite consensus disorder prediction 1537 1577 - -
Gso19g1056 1649 Gene3D SH2 domain 1350 1446 IPR036860 -
Gso19g1056 1649 Gene3D - 1123 1211 IPR012340 -
Gso19g1056 1649 SUPERFAMILY RuvA domain 2-like 1016 1105 IPR010994 -
Gso19g1056 1649 Coils Coil 59 84 - -
Gso19g1056 1649 SUPERFAMILY SH2 domain 1255 1341 IPR036860 -
Gso19g1056 1649 Pfam Holliday-junction resolvase-like of SPT6 741 897 IPR028231 -
Gso19g1056 1649 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 86 1646 - -
Gso19g1056 1649 Gene3D - 732 1122 IPR037027 GO:0006139
Gso19g1056 1649 MobiDBLite consensus disorder prediction 74 93 - -
Gso19g1056 1649 Pfam HHH domain 1017 1104 IPR041692 -
Gso19g1056 1649 SUPERFAMILY RuvA domain 2-like 913 1003 IPR010994 -
Gso19g1056 1649 PIRSF Spt6 2 1509 IPR017072 GO:0032968
Gso19g1056 1649 SUPERFAMILY Nucleic acid-binding proteins 1125 1205 IPR012340 -
Gso19g1056 1649 MobiDBLite consensus disorder prediction 1456 1649 - -
Gso19g1056 1649 SUPERFAMILY Tex N-terminal region-like 338 720 - -
Gso19g1056 1649 SMART rnase_8s 742 860 IPR006641 GO:0006139
Gso19g1056 1649 MobiDBLite consensus disorder prediction 9 73 - -
Gso19g1056 1649 CDD SH2_Cterm_SPT6_like 1351 1437 IPR035018 -
Gso19g1056 1649 Gene3D SH2 domain 1238 1349 IPR036860 -
Gso19g1056 1649 Pfam Acidic N-terminal SPT6 35 125 IPR028083 -
Gso19g1056 1649 SUPERFAMILY Ribonuclease H-like 742 897 IPR012337 -
Gso19g1056 1649 MobiDBLite consensus disorder prediction 1462 1476 - -
Gso19g1056 1649 SMART S1_6 1128 1201 IPR022967 -
Gso19g1056 1649 MobiDBLite consensus disorder prediction 140 162 - -
Gso19g1056 1649 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 86 1646 IPR017072 GO:0032968
Gso19g1056 1649 Gene3D - 263 1005 - -
Gso19g1056 1649 Gene3D - 296 498 IPR023319 -
Gso19g1056 1649 MobiDBLite consensus disorder prediction 1 231 - -
Gso19g1056 1649 CDD SH2_Nterm_SPT6_like 1252 1340 IPR035019 -
Gso19g1056 1649 Gene3D - 499 935 IPR023323 -
Gso19g1056 1649 ProSiteProfiles S1 domain profile. 1130 1201 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1056 Gso-Chr19 38287790 38297506 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1056 K11292 - gmx:100809136 3030.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1056 19 38287790 38297506 Gso3g1043 3 35197826 35206992 GST