Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1017 ATGACTCTTGTTCTTCGTAATTCCTCGCCCACCACCATGGCCAACTTCTCCTCCAACCAGATTCGCTTTCTCCTCAGTTCTTTGAACGAAGTCAACTTTGACTCCGTTTTCCGCCAACTCTCTCAGTTCACAGAATTTGGAACCGCTGGATGCATTTTGCTGCTTCAAACTTGCTTGGATCACTATGACTATGTCAGAAGAGATATGGAAGACACGCAGCATGAGCCAATTCTTGGGGCAGTCATTAAGCACCTCTTGGGCAAACTAAACTTCAGTACAGTGTTTTCTGAGTCAATGAGGAATATAGAAATTAATGAAAGCTTTTTAGAAAGTTTTTGTAACAGATTGCAGTTATCTTTATTGGAAAAAATTGTCATCGGTCTTGCTTTATCTGATTCTGAGAATCCTGATGCCAGGCTGTGTGGCAAAATTTTCTCCATAGCTCGGATTGAGGAATTGTGTGCCAACCCTAGTTCTTTGAGTTACCATGAGCAAATTCACAATATTATCATGTTCCTAAAGCAGTCTGAGGGTCTTTCCAAGCATGTGGATTCCTTTATGCAGATATTGTCACTTGTCCAATTCAAAGATACACCACCTTTTTTCTTGACTCGATTGCTTCCTGATGAGATGAACGAGGCTGATTTTTTAAGGTTGAATATGGAGTTGTTACATGACAGTGGAGAAAATGATTTTGATGCTATTTTAGCAGACATACAGAAGGAAATTAACATAGGAGATATCGTGAAGGAACTAGGCTATGGTTGCACGGTTGATGTCTCAGGGTGCAAGGAGATACTCTCGCTCTTCTTACCTTTAACTGATAATGCGCTATCTAAATTGCTTGGCGCTATTGCTTATAGTAATACTGGGCTGGAGGACAACCAGAACACATACTTAACATTTCGTGCAGCCCATGGATACAATGTGTCTGAGTTGCCGCTTCTGAACTCTTGGAATATTGATGTCTTGATAGATACAGTGAAGCAACTAGCACCACAAACCAATTGGATACGCGTTATAGAAAATCTTGACCATGAAGGGTTTTTCCTTCCTTGTGAAGAAGCATTCTTTTTTCTCATGTCAGTATACAAACATGCCTGTAAGGAACCTTTTCCTCTCCATGCCATATGTGGATCTGTTTGGAAGAACACTGAGGGTCAACTGTCTTTCCTTAAATATGCTGTATCAGCACTACCAGAAATGTTTACCTTTGCACGCTCAGGAAGACAGCTGGCATATGTTGATGCAGTTAATTACCACAAGCATCAAAATGAACATGCAAATAATGCATGGCTGTGTCTTGACCTTTTAGATGTCCTCTGCCTGCTAGCTGAGAAGGGTCACACCAGCATTGTTCGATCCATCCTTGATTATCCCCTTAAACACTGTCCTGAAGTCTTGCTTCTTGGGATGGCACATATAAATACTGCCTACAACCTCTTGCAACGGGAAGTATCTCTGATTGTGTTTCCCATGATAGTAAAAAGTCCTGCAGGCAGTGGGATCATTCTGCAGCTTTGGCATGTTAACCCCAATCTGGTCTTGAGAGGGCTTATGGATTCTCAAAACAATGATGCAGACAGCATTATAAGAATTGTGGACATCTGCCAGGAGCTAAAGGTTGTTCTCTTGTAA 1638 0.4145 MTLVLRNSSPTTMANFSSNQIRFLLSSLNEVNFDSVFRQLSQFTEFGTAGCILLLQTCLDHYDYVRRDMEDTQHEPILGAVIKHLLGKLNFSTVFSESMRNIEINESFLESFCNRLQLSLLEKIVIGLALSDSENPDARLCGKIFSIARIEELCANPSSLSYHEQIHNIIMFLKQSEGLSKHVDSFMQILSLVQFKDTPPFFLTRLLPDEMNEADFLRLNMELLHDSGENDFDAILADIQKEINIGDIVKELGYGCTVDVSGCKEILSLFLPLTDNALSKLLGAIAYSNTGLEDNQNTYLTFRAAHGYNVSELPLLNSWNIDVLIDTVKQLAPQTNWIRVIENLDHEGFFLPCEEAFFFLMSVYKHACKEPFPLHAICGSVWKNTEGQLSFLKYAVSALPEMFTFARSGRQLAYVDAVNYHKHQNEHANNAWLCLDLLDVLCLLAEKGHTSIVRSILDYPLKHCPEVLLLGMAHINTAYNLLQREVSLIVFPMIVKSPAGSGIILQLWHVNPNLVLRGLMDSQNNDADSIIRIVDICQELKVVLL* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1017 545 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 488 542 IPR032194 -
Gso3g1017 545 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 18 543 IPR040398 GO:0017148|GO:0030015
Gso3g1017 545 PANTHER OS10G0556600 PROTEIN 18 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1017 Gso-Chr3 34771387 34774907 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1017 K12604 - gsj:114406564 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0924 7 10773352 10793490 Gso3g1017 3 34771387 34774907 GST