Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0843 ATGGCACGAATAGTACTTTTGCATGCTTTGGTGCTCTTTTTATTCACATTTACATCAGCCATAGCTGAAGCGGTAACTTTGAATGTTGTCAATTTTGGGGCCAAACCAGATGGTGAAACTGACTCCACAAATGCATTCGTGAGTGCATGGGGTAGAGCATGCAGCTCAACAGCACCAACTACCATTTATGTGCCACTAGGAAGGTTCTTAGTTGGTAAAGTAGTGTTTAAGGGGAGGTGCAATAATAAGGGCATCACAATACGTATTGATGGTGCAATGCTTGCACCTTCCAACTATGATGTTATTGGAAATGGTGGAAACTGGTTGTTTTTTGATGATGTTGATGGAGTTTCAATCATTGGTGGTGTTCTTGATGGACAAGGCACAGGCTTGTGGGCATGTAAGAGATCTGGCAAGACTTGTCCAACTGGTGCTACGAACTTGGGATTTACCAATTCGAACAACATTGTGATCAACGGAGTGACCTCTCTGAACAGCCAAATGTTCCATATAGTTATTGACCGATGCAATAATGTGAAACTCCAAGGTATCAAGGTATCAGCTGCAGGAAACAGCCCTAACACTGATGGCATTCATGTGCAACTCTCATCAACTGTCACCATTCTCAACTCTAACATAGCAACCGGTGATGATTGCATCTCAATTGGTCCTGGAACTACTAATTTGTGGATAGAAAACATAGCTTGTGGACCAGGTCATGGTATCAGTGTTGGAAGTTTAGGCAAGGAATTTCAAGAGCCTGGTGTGCAAAATGTGACAGTTAAAACAATGACATTTACTGGAACTGAAAATGGTGTACGAATTAAGTCTTGGGGGAGACCTAGCAATGGATTTGCAAGGAACATCCTTTTCCAACATGCTACCATGGTTAATGTTCAAAATCCCATTGTAATTGACCAAAATTATTGCCCCCATGAGAAGAATTGTCCGGGTCAGGTTTCCGGGGTTGAAGTTAGCAATGTTATATACCAAGATATTTATGGAACCTCAGCAACAGAGATTGCAGTTAAAATCAATTGTAGTCCAAAGTATCCATGCATTGGAATAAGTTTGGAAGATGTGATGCTTACATATGAAAGCAAGCAAGCAGTGGCTTCATGCAATCATGCCGGAGGAATCACATCTGGTGTAGTTCAACCCAACAACTGTTTCTAG 1176 0.4167 MARIVLLHALVLFLFTFTSAIAEAVTLNVVNFGAKPDGETDSTNAFVSAWGRACSSTAPTTIYVPLGRFLVGKVVFKGRCNNKGITIRIDGAMLAPSNYDVIGNGGNWLFFDDVDGVSIIGGVLDGQGTGLWACKRSGKTCPTGATNLGFTNSNNIVINGVTSLNSQMFHIVIDRCNNVKLQGIKVSAAGNSPNTDGIHVQLSSTVTILNSNIATGDDCISIGPGTTNLWIENIACGPGHGISVGSLGKEFQEPGVQNVTVKTMTFTGTENGVRIKSWGRPSNGFARNILFQHATMVNVQNPIVIDQNYCPHEKNCPGQVSGVEVSNVIYQDIYGTSATEIAVKINCSPKYPCIGISLEDVMLTYESKQAVASCNHAGGITSGVVQPNNCF* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0843 391 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 390 - -
Gso3g0843 391 Pfam Glycosyl hydrolases family 28 54 375 IPR000743 GO:0004650|GO:0005975
Gso3g0843 391 ProSitePatterns Polygalacturonase active site. 233 246 IPR000743 GO:0004650|GO:0005975
Gso3g0843 391 Gene3D - 15 390 IPR012334 -
Gso3g0843 391 PANTHER - 1 390 - -
Gso3g0843 391 SUPERFAMILY Pectin lyase-like 10 391 IPR011050 -
Gso3g0843 391 SMART pbh1 256 277 IPR006626 -
Gso3g0843 391 SMART pbh1 176 202 IPR006626 -
Gso3g0843 391 SMART pbh1 286 307 IPR006626 -
Gso3g0843 391 SMART pbh1 203 224 IPR006626 -
Gso3g0843 391 SMART pbh1 226 246 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0843 Gso-Chr3 30525028 30527820 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0843 10 388 Glycoside Hydrolase AT2G43870 63.947 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0843 K01184 - gmx:100784002 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0843 3 30525028 30527820 Gso1g0674 1 20860554 20863521 PCT