Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0674 ATGGCAAGGGTTGTTGAAACTCTATTCTTGGTTATGTCATGCATCTTATGCAGTGTTTTGTTAGGCTTTTCCGATGCAGCTCCAACTTCTACATACAATGTGGTCAAGTTTGGGGCAAAACCGGATGGAAAAACTGACTCCACTGAACCATTCATAAAGTCTTGGCAATCAGCATGTACTAGTCTCAATCCTGCCACTATTTTTGTGCCTAAAGGGAGGTACTTGCTGAAAAACACTAATTTTCGAGGTCCATGCAAGAGGAAGGTCACATTCCTCATAGCTGGGACTCTTGTGGCTTCTGAAGATTACCATGCACTAGGAAATTCTGGATTTTGGATTTTGTTCAATCATGTGGATAATCTCGTTGTTTCTGGTGGGAGATTGGATGCTAAAGGGGCTGGTTTCTGGAATTGCAGGAGATCTGGAAAGAGTTGCCCCGTTGGAGCAAGGTCAATGACATTCAACTGGGTGAATAACTTGGTGGTTAGTGGCATAACTTCAATCAACAGCCAGCTAAGTCACATTGTGATCAACGCTTGCAACAATGTTCTTGTTAAAAATGTGAGGCTTATTGCACCAGACCAGAGCCCTAACACCGATGGCATTCATGTTGAACGCTCAACTGGGGTTACCATTAATGGGTGTACCTTGCAAACTGGTGATGACTGCATATCCATTGGTGATGCCACCTACAACATCTTCATGTCCCACATAAAATGTGGTCCTGGTCATGGCGTAAGCATTGGAAGTTTGGGGCAAAAACTGGACGAAAAAGGAGTAGAAAATGTGACTCTGACGAATGCCATCTTCTCTGGCTCGGATAATGGGGTGAGGATAAAGACATGGGCCAGACCAAGCAACGGGTTCGTTAGGAATGTTCTGTTCCAAAACATTATAATGGACAATGTTGAGAATCCCATCATCATAGATCAGAACTACTGCCCCAACAATCAAGGTTGTCCTGGCCAGACTTCAGGAATTAAGATCAGCCAAATTACATATTTGAACATAAATGGAAGTTCAGCAACACCAGAGGCAGTAACATTTGATTGCAGCCCAAGTAATCCATGTCAAGGGATCAAATTGCATGATGTAAACCTAACCTACAAGAACAAAGCTGCAACGTCATCATGTAAGAACATTGATGGGACGAGCACCGGAACACTGGCGCCAGAAAGTTGTTTTTAA 1188 0.4335 MARVVETLFLVMSCILCSVLLGFSDAAPTSTYNVVKFGAKPDGKTDSTEPFIKSWQSACTSLNPATIFVPKGRYLLKNTNFRGPCKRKVTFLIAGTLVASEDYHALGNSGFWILFNHVDNLVVSGGRLDAKGAGFWNCRRSGKSCPVGARSMTFNWVNNLVVSGITSINSQLSHIVINACNNVLVKNVRLIAPDQSPNTDGIHVERSTGVTINGCTLQTGDDCISIGDATYNIFMSHIKCGPGHGVSIGSLGQKLDEKGVENVTLTNAIFSGSDNGVRIKTWARPSNGFVRNVLFQNIIMDNVENPIIIDQNYCPNNQGCPGQTSGIKISQITYLNINGSSATPEAVTFDCSPSNPCQGIKLHDVNLTYKNKAATSSCKNIDGTSTGTLAPESCF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0674 395 Pfam Glycosyl hydrolases family 28 59 382 IPR000743 GO:0004650|GO:0005975
Gso1g0674 395 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 14 394 - -
Gso1g0674 395 SUPERFAMILY Pectin lyase-like 20 395 IPR011050 -
Gso1g0674 395 PANTHER - 14 394 - -
Gso1g0674 395 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Gso1g0674 395 SMART pbh1 290 311 IPR006626 -
Gso1g0674 395 SMART pbh1 180 206 IPR006626 -
Gso1g0674 395 SMART pbh1 260 281 IPR006626 -
Gso1g0674 395 SMART pbh1 207 228 IPR006626 -
Gso1g0674 395 Gene3D - 18 393 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0674 Gso-Chr1 20860554 20863521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0674 3 395 Glycoside Hydrolase AT2G43890 62.595 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0674 K01184 - gmx:100797183 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0843 3 30525028 30527820 Gso1g0674 1 20860554 20863521 PCT