Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0801 ATGAATATAAATGGAATGCCAAAAAAGGCTTCTAGTAGTGTGCCCAAATGGCACTCTTCTTCCGTCACAACCAAAATGTTGAATAACTTCAATCCTATATGCCAAGCTACCCAACAATCAACTCTCAAGGGGAAGTTTGTGATCACACACAATCATAGCAAATCAATACCTGGAAAATTAATTTCTGTTCAGATTTATAGTGGGACAGAGGTGGATCCTGAGACTGGTAAAGGGAAGTTGAGTGAGAAAGCATGTTTCAAACAGGGTGAGAGCATAAAACATAGCCATGATGCACAAACCATGATATATAAAATCAAGATACATGTTGACTCACATTTTGGAACTCCAAGAGCTTTTGTGATTCAAAACCAGCACAAGAAGAAATTCTTCCTTCAATCTGCATCTATTGAGACTAATGACCGCATCATTCACTTTGATTGCAATTCCTGGATATATCCAATCAAGAAGACCAAATCTGATAGACTCTTCTTCTCAAATAGATGCTGTCTTCCAAGTCACACACCAAGAGCACTAGTGGAGCTAAGAAAGGAAGAGCTTGATAGATTGAGGGGTAATGGAATGGGAGAAAGAAAGGAATGGGATAGAATTTATGACTATGACTGCTATAATGACCTTGGTGATCCTGACAAAGGTCCAGAGCACCTTAGACCTGTCCTTGGTGGCTCAAGGTTATTTCCATATCCACGCAGAGGAAGAACAGGTCGAAAACATAGTACAGCAGGTCCATCGTGCGAGAGCCGGCCACAACCAATTAACTTTGACATACATGTTCCATCAGATGAGAGATTTGGCCCCAATAAATTGAAGGAGTTGAAATCAAATTGTGTCCATGCTATGGTACATTTTTTATCACCAAAGGCAGAATTATTACCACGACGAAATTCTGCTAATTTTCAATCATTCGAAGAGTTACTTGACATGTTTTCTAGCAATAGGAACCAAAAAATAGAGGGATGGATGAGAGACAACTTAAAGAAACTGATACCTGTTGAGCACTTAAAGGAAATAAATCATGCAATGAAAGAAAACCGTGGGCAATTAGCTATCCCTCAAATCATATCTGAAAATGAATGGGCTTGGAAAGATGATATGGAATTTGGACGACAAATGATTGCAGGAACTCACCCCACCAGAATCCAGTGCTTAACGACATTCCCGCCTCAAAACAAATTTGGAATACAGAGTTCAATAAAACAATCAATCATAGAACAGAAGCTAGAAGGATGGACACTTTCTCAGGCAATGGAACATGGAAGAATATTCATGTTGGACCACCATGACTTTCTCATTCCATATTTAAACAGAATAAATGCAAATGGGGTATGTGCTTATGCATCCAGGACTCTTCTATTCTTAAGGAGTGATGGCATGCTTAAACCATTGACAATAGAACTTAGCTTGCCAGGCCAATCTCCTCACCTTGAAATCCACAGAGTTTTTCTTCCAGCCAAGCAGGGAACACAAGCAGCACTTTGGCAGCTGGCTAAAGCTCATGTTTTAGCTAATGATGCTGTTTACCATCAACTAATTAGCCATTGGTTATACACCCATGCAGTTGTTGAACCATTTATCATTGCCACCAAAAGAAGGCTAAGTGTTATGCATCCAATCCATCGATTGTTGAATCCTCATTTCAAAGACACCATGCACATAAATGCCTTGGCAAGACTGATCCTTATAAACTCAGGAGGAATTTTCGAGAGAATATTATTTCCTGGTGAAATCTGTATGCAGATATCATGTGACCTCTATAAAGAGTGGAGATTCAATGAACAAGGACTTCCTGCCGATCTACTCAAAAGGGGTATGGCTGTAAAAGATCCAGACAAAAATAACCCCACTAGGATTCAGCTTCTATTGCTGGACTATCCCTATGCCACTGATGGACTTGAAATATGGGTAGCCATCAAAGAATGGGTCAAAGACTTCTGCTCATTCTTCTACAAAGACAATGAGGCCATTGAGGGTGATGTTGAACTACAAGCCTGGTGGTCAGAGATTAGAACACAAGGCCATGGTGACAAATACAATGACATATGGTGGTACCAAATGACAACACTCTCAAACCTTGTGGAGTCACTTACAACCCTCATATGGATTGCTTCTGCCAAGCATGCATCTCTAAACTATGGCCAATATGCATACAATGGTTTCCCTCCAAACCGCCCCATGCTATGCCGAAAGTTTGTGCCTCTAGAAGGGACAGTGGAGTTTGGTGAGTTCCTCAAGGACCCAGATAAGTTTTTCCTCAAGATGCTACCAGACAGGTTTGAGATGAGTCTTGCAGCAGCATTGGTGGATGTGCTCTCAAGGCACACTTGTGATGAAGTCTACTTGGGGTGCCAGCAATCACCAGGGTGGATAGACAATGAAGTGATTCAGAATAGGTTTGCTGAATTCAAACAAGAACTAAAAGAGATTCAGACAAGGATCATGCAAAGGAATAGGGACCCTAAGCTTAAGAATAGGCGTGGCCCTGCAAACATTGAGTACACTCTTTTGTACCCTGATACATCTAGTTCTTCTGCCTCAGCTAGTGGAATCACTGGAAGGGGGATACCAAATAGCATATCAATTTGA 2601 0.4098 MNINGMPKKASSSVPKWHSSSVTTKMLNNFNPICQATQQSTLKGKFVITHNHSKSIPGKLISVQIYSGTEVDPETGKGKLSEKACFKQGESIKHSHDAQTMIYKIKIHVDSHFGTPRAFVIQNQHKKKFFLQSASIETNDRIIHFDCNSWIYPIKKTKSDRLFFSNRCCLPSHTPRALVELRKEELDRLRGNGMGERKEWDRIYDYDCYNDLGDPDKGPEHLRPVLGGSRLFPYPRRGRTGRKHSTAGPSCESRPQPINFDIHVPSDERFGPNKLKELKSNCVHAMVHFLSPKAELLPRRNSANFQSFEELLDMFSSNRNQKIEGWMRDNLKKLIPVEHLKEINHAMKENRGQLAIPQIISENEWAWKDDMEFGRQMIAGTHPTRIQCLTTFPPQNKFGIQSSIKQSIIEQKLEGWTLSQAMEHGRIFMLDHHDFLIPYLNRINANGVCAYASRTLLFLRSDGMLKPLTIELSLPGQSPHLEIHRVFLPAKQGTQAALWQLAKAHVLANDAVYHQLISHWLYTHAVVEPFIIATKRRLSVMHPIHRLLNPHFKDTMHINALARLILINSGGIFERILFPGEICMQISCDLYKEWRFNEQGLPADLLKRGMAVKDPDKNNPTRIQLLLLDYPYATDGLEIWVAIKEWVKDFCSFFYKDNEAIEGDVELQAWWSEIRTQGHGDKYNDIWWYQMTTLSNLVESLTTLIWIASAKHASLNYGQYAYNGFPPNRPMLCRKFVPLEGTVEFGEFLKDPDKFFLKMLPDRFEMSLAAALVDVLSRHTCDEVYLGCQQSPGWIDNEVIQNRFAEFKQELKEIQTRIMQRNRDPKLKNRRGPANIEYTLLYPDTSSSSASASGITGRGIPNSISI* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0801 866 Coils Coil 797 817 - -
Gso3g0801 866 SMART LH2_4 40 166 IPR001024 GO:0005515
Gso3g0801 866 Gene3D - 492 865 - -
Gso3g0801 866 Pfam PLAT/LH2 domain 65 164 IPR001024 GO:0005515
Gso3g0801 866 Gene3D - 274 364 IPR027433 -
Gso3g0801 866 PANTHER LIPOXYGENASE 96 864 - -
Gso3g0801 866 MobiDBLite consensus disorder prediction 233 258 - -
Gso3g0801 866 Pfam Lipoxygenase 178 843 IPR013819 GO:0016702|GO:0046872
Gso3g0801 866 ProSiteProfiles PLAT domain profile. 41 165 IPR001024 GO:0005515
Gso3g0801 866 PANTHER LIPOXYGENASE 96 864 IPR000907 GO:0016702|GO:0046872
Gso3g0801 866 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 168 866 IPR013819 GO:0016702|GO:0046872
Gso3g0801 866 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 53 167 IPR036392 GO:0005515
Gso3g0801 866 Gene3D PLAT/LH2 domain 17 168 - -
Gso3g0801 866 Gene3D - 170 272 - -
Gso3g0801 866 PRINTS Plant lipoxygenase signature 135 153 IPR001246 GO:0016491
Gso3g0801 866 PRINTS Plant lipoxygenase signature 161 182 IPR001246 GO:0016491
Gso3g0801 866 PRINTS Plant lipoxygenase signature 200 216 IPR001246 GO:0016491
Gso3g0801 866 PRINTS Plant lipoxygenase signature 233 252 IPR001246 GO:0016491
Gso3g0801 866 PRINTS Plant lipoxygenase signature 302 323 IPR001246 GO:0016491
Gso3g0801 866 PRINTS Plant lipoxygenase signature 352 368 IPR001246 GO:0016491
Gso3g0801 866 PRINTS Plant lipoxygenase signature 451 475 IPR001246 GO:0016491
Gso3g0801 866 PRINTS Plant lipoxygenase signature 773 787 IPR001246 GO:0016491
Gso3g0801 866 Gene3D - 365 491 - -
Gso3g0801 866 SUPERFAMILY Lipoxigenase 170 866 IPR036226 -
Gso3g0801 866 ProSitePatterns Lipoxygenases iron-binding region signature 2. 541 551 IPR020834 GO:0016702|GO:0046872
Gso3g0801 866 PRINTS Lipoxygenase signature 496 513 IPR013819 GO:0016702|GO:0046872
Gso3g0801 866 PRINTS Lipoxygenase signature 514 531 IPR013819 GO:0016702|GO:0046872
Gso3g0801 866 PRINTS Lipoxygenase signature 534 554 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0801 Gso-Chr3 28787418 28795146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0801 58 866 Acyl Lipid Metabolism Gene Families AT3G22400 46.433 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0801 K00454 - gmx:100797946 1770.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0660 16 9180409 9190671 Gso3g0801 3 28787418 28795146 GST