Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0660 ATGAATATCAATGGAATGCCAAAAAAGGCTTCAAGTAGTGTGCCCAAATGGCAGTACTCTTCTTCCGTCACAACCAAAATGTTGAATAACTTGAATCCTATATGCCAAGCTACCCAACAATTAACTCTCAAGGGGAAGTTTGTGATCACGCACAATCATAGCAAATCAATACCTGGAAAATTAATTTCTGTTCAGATTTATAGTGAGACAGAGGTGGATCCTGAGACTGGTAAAGGGAAGTTGAGTGAAAAAGCATGTTTCAAACAGTGTGAGAGCATGAAACATAGCCATGATGCACAAACCATGATATATAAAATCAAGATTCATATTGACTCACATTTTGGAACTCCAAGAGCTTTTCTGATTCAAAACAAGCACAAGAAGAAATTCTTCCTTCAATCTGCATCTATTGAGACTAATGACCACATCATTCACTTTGATTGCAATTCCTGGATATATCCAATCAAGAAGACCAAATCTGATAGACTCTTCTTCTCAAATAGATGCTGTCTTCCAAGTCACACACCAAGAGCACTAGTGGAACTAAGAAAGGAAGAGCTTGATAGATTGAGGGGAAATGGAATGGGAGAAAGAAAGGAATGGGATAGAATTTATGACTATGACTGCTATAATGACCTTGGTGATCCTGACAAAGGTCCAGAGCACCTTAGACCTGTCCTTGGTGGCTCAAGGTTATTTCCATATCCTCGTAGAGGAAGAACAGGTCGAAAACATAGTACAGCAGGTCCATCGTGTGAGAGCCGACCACAACCAATGAACTTTGACATATATGTTCCATCAGATGAGAGATTTGGCCCCAATAAATTGAAGGAGTTGAAATCAAATTGTGTCCATGCTATGGTACATTTTTTATCACCAAAGGCAGAATTCTTACCACGACGAATTTCTGCTGACTTTCATTCATTCGAAGAGTTGCTTGACATGTTTTCTAGCAATAGGAACCAAACAATAGAGGGATGGATGAGAGACAACTTGAAGAAACTGATACCTGTTGAGCACTTAAAGGAAATCAATCATGCAATGAAAGAAAACCATGGGCAATTACCTATCCCTCAAATCATATCTGAAAATGAATGGGCTTGGAAAGATGATATGGAGTTTGGACGACAAATGATTGCAGGAACTCACCCCACCAGAATCCAGTGCTTAACGACATTCCCGCCTCAAAACAAATTCGGAATACAGAGTTCGATAAAACAATCAATCATAGAACAGAGGCTAGAAGGATGGACACTTTCTCAAGCAATGGAACATGGAAGAATATTCATGCTGGACCACCATGACTATCTCATTCCATATTTGAACAGAATAAATGCAAATGGGGTATGTGCTTATGCATCCAGGACTCTTCTATTCTTAAGGAGTGATGGCATGCTTAAACCATTGACAATAGAACTTAGCTTGCCAGGCCAATATCCTCACCTTGAAATCCATAGAGTTTTTCTTCCAGCCAAGCAGGGAACACAAGCAGCACTTTGGCAGCTAGCTAAAGCTCATGTTTTAGCTAATGATGCTGTTTACCATCAACTAATTAGCCATTGGTTATACACCCATGCAGTTATTGAACCATTTATCATTGCCACCAAAAGAAGGCTAAGTGTTATGCATCCAATCCATCGGTTGTTGAATCCACATTTCAAAGACACCATGCACATAAATGCATTGGCAAGACTGATACTTATAAACTCAGGAGGAATTTTCGAGAGAATATTATTTCCTGGTGAGATCTGTATGCAGATATCATGTGACCTCTATAAAGAGTGGAGATTTAAGGAACAAGGACTTCCTGCCGATCTACTCAAAAGGAGCATGGCTGTAAAAGATCCAGACATAAATAACCCCACTGGGATTCAACTTCTATTGCTGGACTATCCCTATGCCACTGATGGACTTGAAATATGGGTAGTCATCAAAGAATGGGTCAAAGACTTTTGCTCATTCTTCTACAAAGACAATGAGGCCATTGAGGGTGATGTTGAACTCCAAGCCTGGTGGTCAGAGATTAGAACAAATGGCCATGGTGACAAACACAACGACACATGGTGGTACCAACTGACAACACTCTCAAACCTTGTGGAGGCACTAACAACCCTCATATGGATTGCTTCTGCCAAGCATGCATCTCTAAACTATGGCCAACATGCATACAATGGTTACCCTCCAAACCGCCCCACGCTATGCCGGAAGTTTGTGCCTCTAGAAGGCAGAGTGGAGTTTGGTGAGTTCCTTAAGGACCCAGATAAGTTCTTCCTTGGGATGCTACCTGATAGGTTTGAGATGAGTCTTGCAGTGGCATTGGTGGATGTGCTCTCACGACACACTAGTGATGAGGTCTACTTGGGGTGCCAGCAATCACCAGGTTGGATAGACAATGAAGTGATTCAAAATAGGTTTGCTGAGTTCAAGCAAGAACTAAAGGAGATTCAGTCAAGGATCATGCAAAGGAATAGGGACCTTAAGCTTAAGAATAGACGTGGTCCTGCAAACATTGAGTACACTCTTTTGTACCCTGACACCTCTAGTTCTGCCTCAACAAGTGGAATCACTGGAAGGGGGATACCTAATAGCATATCAATTTGA 2601 0.4118 MNINGMPKKASSSVPKWQYSSSVTTKMLNNLNPICQATQQLTLKGKFVITHNHSKSIPGKLISVQIYSETEVDPETGKGKLSEKACFKQCESMKHSHDAQTMIYKIKIHIDSHFGTPRAFLIQNKHKKKFFLQSASIETNDHIIHFDCNSWIYPIKKTKSDRLFFSNRCCLPSHTPRALVELRKEELDRLRGNGMGERKEWDRIYDYDCYNDLGDPDKGPEHLRPVLGGSRLFPYPRRGRTGRKHSTAGPSCESRPQPMNFDIYVPSDERFGPNKLKELKSNCVHAMVHFLSPKAEFLPRRISADFHSFEELLDMFSSNRNQTIEGWMRDNLKKLIPVEHLKEINHAMKENHGQLPIPQIISENEWAWKDDMEFGRQMIAGTHPTRIQCLTTFPPQNKFGIQSSIKQSIIEQRLEGWTLSQAMEHGRIFMLDHHDYLIPYLNRINANGVCAYASRTLLFLRSDGMLKPLTIELSLPGQYPHLEIHRVFLPAKQGTQAALWQLAKAHVLANDAVYHQLISHWLYTHAVIEPFIIATKRRLSVMHPIHRLLNPHFKDTMHINALARLILINSGGIFERILFPGEICMQISCDLYKEWRFKEQGLPADLLKRSMAVKDPDINNPTGIQLLLLDYPYATDGLEIWVVIKEWVKDFCSFFYKDNEAIEGDVELQAWWSEIRTNGHGDKHNDTWWYQLTTLSNLVEALTTLIWIASAKHASLNYGQHAYNGYPPNRPTLCRKFVPLEGRVEFGEFLKDPDKFFLGMLPDRFEMSLAVALVDVLSRHTSDEVYLGCQQSPGWIDNEVIQNRFAEFKQELKEIQSRIMQRNRDLKLKNRRGPANIEYTLLYPDTSSSASTSGITGRGIPNSISI* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0660 866 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 866 IPR013819 GO:0016702|GO:0046872
Gso16g0660 866 Gene3D - 275 365 IPR027433 -
Gso16g0660 866 Gene3D PLAT/LH2 domain 18 169 - -
Gso16g0660 866 PANTHER LIPOXYGENASE 96 864 IPR000907 GO:0016702|GO:0046872
Gso16g0660 866 Gene3D - 493 865 - -
Gso16g0660 866 Gene3D - 171 273 - -
Gso16g0660 866 PANTHER LIPOXYGENASE 96 864 - -
Gso16g0660 866 ProSitePatterns Lipoxygenases iron-binding region signature 2. 542 552 IPR020834 GO:0016702|GO:0046872
Gso16g0660 866 SUPERFAMILY Lipoxigenase 171 866 IPR036226 -
Gso16g0660 866 Pfam Lipoxygenase 179 844 IPR013819 GO:0016702|GO:0046872
Gso16g0660 866 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Gso16g0660 866 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Gso16g0660 866 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Gso16g0660 866 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Gso16g0660 866 PRINTS Plant lipoxygenase signature 303 324 IPR001246 GO:0016491
Gso16g0660 866 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Gso16g0660 866 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Gso16g0660 866 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Gso16g0660 866 ProSiteProfiles PLAT domain profile. 42 166 IPR001024 GO:0005515
Gso16g0660 866 Coils Coil 798 825 - -
Gso16g0660 866 MobiDBLite consensus disorder prediction 238 258 - -
Gso16g0660 866 PRINTS Lipoxygenase signature 497 514 IPR013819 GO:0016702|GO:0046872
Gso16g0660 866 PRINTS Lipoxygenase signature 515 532 IPR013819 GO:0016702|GO:0046872
Gso16g0660 866 PRINTS Lipoxygenase signature 535 555 IPR013819 GO:0016702|GO:0046872
Gso16g0660 866 SMART LH2_4 41 167 IPR001024 GO:0005515
Gso16g0660 866 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 53 168 IPR036392 GO:0005515
Gso16g0660 866 Gene3D - 366 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0660 Gso-Chr16 9180409 9190671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0660 59 866 Acyl Lipid Metabolism Gene Families AT3G22400 45.939 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0660 K00454 - gmx:100793997 1771.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0660 16 9180409 9190671 Gso3g0801 3 28787418 28795146 GST