Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0672 ATGAAACCGTGCTTGCGGACAAAGCCTCTTCTTCTTCTGCTCTCTCTGCTACTTCTCCACAACATCACATTCGTTCTCTCCGATGATTCCAGCAGGAAAAACACCTTCCGCGAGCGCGAAGCCTCCGACGACTCCCTCGGATACCCCGAAATAGATGAGGATGCACTTGTGAATTCAAAGTGCCCCAAGAATTTGGAGCTCAGATGGCAAACAGAAGTTAGTTCCAGCATCTATGCAAATCCCTTGATTGCTGATATTAACAGTGATGGGAAGCTTGAGATTGTGGTTCCGTCTTTTGTTCACTACCTTGAGGTTCTAGAAGGTGCTGATGGGGACAAAATGCCAGGCTGGCCTGCTTTCCACCAATCAACTGTGCATTCTAGTCCTCTTCTATATGACATTGACAAAGATGGAGTGAGAGAAATAGCTTTGGCAACCTACAATGGTGAAGTGCTGTTTTTCAGGGTTTCGGGCTATATGATGTCAGATAAGCTTGAAGTTCCGCGTAGGAAGGTGCTAAAAAAATGGTTTGTGGGCTTGGATCCTGACCCAGTGGACCGTTCTCATCCAGATGTTCATGATGACCAACTTGTCCAAGATGCTACTATCAAGAATTCTATGTCTCAAATGAATGGAAGTAGACATGAAGCCAAATCTTCAGCTGCCACATCAACAGAAAACCACCTTGAGACAAAAAATTTGTCCAATCCTGAGCCAGAAAAGAAAATAAATGGTAGTCAAGTAGATGAGAGTATTAAGGTGCCTAATCCTGAGCCAGAAAAGAAAATAAATGGAAGTCAAATAGATGAGATTATTAAGGTGCCTAATCCTGAGCCAGAAAAGAAAATAAATGGAAGTCAAGTAGACGAGAGTATTAAGGTGCCAACTGTTGTGGATAATTCCTCTGTGAATGCTGGGTCTCTGGAAACTGTTCATGCTGATAATAAAACCAGCACTGGGAGACGTCTTCTGGAAGATAACAATTCCAAAGGAGCAGTGCAAGGCAGTTCTGAATCCAAAGTTAAAGAGGGTATTCATGCTGCAACTGTGGAAAATGATGAAGGCCTGGATGCAGATGCTGATTCATCTTTTGAGTTATTCCGTAATAGTGAAGATCTGGCTGATGAGTATAGTTATGATTATGATGATTATGTTGATGAAACAATGTGGGGTGATGAAGAATGGACTGAAGTTAAACATGAAAAATTAGAAGATTATGTGAATGTTGACTCACACATCTTGTGCACTCCTGTCATTGCTGATATCGACAATGATGGTGTTTCAGAAATGATTGTTGCCGTTTCTTATTTCTTTGATCACGAGTATTATGACAACCAGGAGCATCGGAAAGAACTGGGTGATATTGACATTGGGAAATATGTTGCTGGTGGTATTGTTGTTTTTAATCTGGATACGAAACAAGTTAAATGGACTGCAGAACTTGATCTGAGTACAGATACTTCAAACTTCCGTGCCTACATATATTCTTCCCCAACTGTTGTAGATTTGGATGGTGATGGGAATCTTGACATTCTTGTTGGAACTTCATATGGCCTGTTTTATGTGTTAGATCATCATGGTAAGGTTAGACAAAAGTTTCCTCTTGAAATGGCTGAGATTCAAGGAGCTGTTGTTGCGGCTGATGTTAATGATGACGGGAAAATTGAACTAGTTACAGCTGATACACATGGAAATGTTGCTGTATGGACTCCAAAAGGAGATTTAATATGGGAAAAACATCTAAAGAGTCTTATTCCACAGGGTCCTACTGTTGGTGATGTTGATGGGGATGGCCATACTGAGCTTGTTGTGCCAACACTATCTGGGAAGATTCATGTTCTTGATGGCAGGGATGGGTCATCTATTGGGCGGTATCCATATCAAACTCATGGAAGAATAATGAATCAAGTTCTTCTAGTCGATTTAAGTAAAGACAAGGAGAAAAAGAAGGGATTAACTATTGTTACCACATCATTTGATGGTTATTTGTACCTCATTGATGGACCTACTGGATGTGCTGATGCTGTTGACATTGGTGAAACTTCGTATAGCATGGTCTTGGCAGACAATGTTGATGGTGGGGATGATCTTGATCTAATTGTCACAACAATGAATGGCAATGTCTTCTGCTTCTCAACCCCATCTCCTCATCATCCCCTAAAGGCATGGAGATTGCCTAGTCAAGGAAGAAATAATCTTGCAAATCGTTACAGTCGTGAAGGTATCTATGTTACTCATCCTTCTAGGGCATTCCGCGATGAGGAAGGCAAAAGCTTTTGGGTGGAAATTGAGATTGTAGATAACTACAGATACCCATCTGGGCATCAAGGACCGTACAAAGTCACTACTTCCTTGCTCGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTGAACAATACCTATGGTCAACCTGGTAAATATCGGATTAAGCTGCCAACTGTGTCGGTAAGGACCATGGGAACGGTTTTGGTTGAGATGGTTGACAGAAATGGACTGTATTTCTCTGATGATTTCTCTCTTACATTCCATATGCACTACTATAAACTGTTGAAGTGGCTTCTTGTTCTTCCAATGCTTGGGATGTTTGGTGTGCTTGTAATCCTTCGCCCACAAGGCTCAATGCCATTGCCATCTTTTTCAAGGAACAATGATTAA 2661 0.4141 MKPCLRTKPLLLLLSLLLLHNITFVLSDDSSRKNTFREREASDDSLGYPEIDEDALVNSKCPKNLELRWQTEVSSSIYANPLIADINSDGKLEIVVPSFVHYLEVLEGADGDKMPGWPAFHQSTVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMSDKLEVPRRKVLKKWFVGLDPDPVDRSHPDVHDDQLVQDATIKNSMSQMNGSRHEAKSSAATSTENHLETKNLSNPEPEKKINGSQVDESIKVPNPEPEKKINGSQIDEIIKVPNPEPEKKINGSQVDESIKVPTVVDNSSVNAGSLETVHADNKTSTGRRLLEDNNSKGAVQGSSESKVKEGIHAATVENDEGLDADADSSFELFRNSEDLADEYSYDYDDYVDETMWGDEEWTEVKHEKLEDYVNVDSHILCTPVIADIDNDGVSEMIVAVSYFFDHEYYDNQEHRKELGDIDIGKYVAGGIVVFNLDTKQVKWTAELDLSTDTSNFRAYIYSSPTVVDLDGDGNLDILVGTSYGLFYVLDHHGKVRQKFPLEMAEIQGAVVAADVNDDGKIELVTADTHGNVAVWTPKGDLIWEKHLKSLIPQGPTVGDVDGDGHTELVVPTLSGKIHVLDGRDGSSIGRYPYQTHGRIMNQVLLVDLSKDKEKKKGLTIVTTSFDGYLYLIDGPTGCADAVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKAWRLPSQGRNNLANRYSREGIYVTHPSRAFRDEEGKSFWVEIEIVDNYRYPSGHQGPYKVTTSLLVPGNYQGERTIKLNNTYGQPGKYRIKLPTVSVRTMGTVLVEMVDRNGLYFSDDFSLTFHMHYYKLLKWLLVLPMLGMFGVLVILRPQGSMPLPSFSRNND* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0672 886 PANTHER PROTEIN DEFECTIVE IN EXINE FORMATION 1 11 885 - -
Gso3g0672 886 PANTHER - 11 885 IPR045232 -
Gso3g0672 886 MobiDBLite consensus disorder prediction 207 263 - -
Gso3g0672 886 Gene3D - 327 718 IPR015943 GO:0005515
Gso3g0672 886 MobiDBLite consensus disorder prediction 233 247 - -
Gso3g0672 886 MobiDBLite consensus disorder prediction 207 232 - -
Gso3g0672 886 Pfam FG-GAP-like repeat 548 604 IPR013517 -
Gso3g0672 886 SUPERFAMILY Integrin alpha N-terminal domain 69 645 IPR028994 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0672 Gso-Chr3 20446600 20455933 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0672 - - gmx:100805038 1766.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0672 3 20446600 20455933 Gso3g0672 3 20446600 20455933 ECH
Gso1g0932 1 37595646 37608800 Gso3g0672 3 20446600 20455933 GST