Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0181 ATGCGTGCTCAACAAAGTTCTTATTCTCAATCTCCCTTAATTATGTTGGAACCTTTCGCTACTTGCTTCACCTTTCTTCATAGGAAGACCAAATTCTTCCTCAACAAACCAAGAATCAAGGAGATGATGGGTGCATGCTGCAAGAGAAGACAATCCAACATAAAATTATTCTCTTCAAGTTCTGACCTGTCAACCTCTTCTTTCCTTCACATGAAGCTCTCCACTCAGTTTCATCAAGTTTTCAAGCTTATTGACACTAATGGGGATGGGAAGATCTCAATCAATGAGCTCAGTGAATTGCTCTCAAGCCTTGGATACAACAAGTGCACTGCTGTCAAGGAAGCTGAAGGCATGGTGAAAGTGTTGGACTTCAATAGAGATGGGTTTGTGGACTTGGATGAGTTCATGATTGTCATGAATGGCATGGAAGAAGAAAAAGAAGAGAAATTTGGAAGTGGCATGGAGCATGATGGTGGTTACCTCATGGATGCTTTTCTTATCTTTGACACTGACAAGAATGGCCTGATTTCAGCCAAGGAACTGCAGAGAGTTCTGATCAATCTAGGGTGTGATAATTGTAGTCTTAGAGAGTGCAAGCGTATGATAAAAGGGGTTGATAAGAATGGAGATGGGTTTGTGGATTTTGAAGAATTTCGATCCATGATGCAAAGTGGATTTGCTAATTAG 687 0.4076 MRAQQSSYSQSPLIMLEPFATCFTFLHRKTKFFLNKPRIKEMMGACCKRRQSNIKLFSSSSDLSTSSFLHMKLSTQFHQVFKLIDTNGDGKISINELSELLSSLGYNKCTAVKEAEGMVKVLDFNRDGFVDLDEFMIVMNGMEEEKEEKFGSGMEHDGGYLMDAFLIFDTDKNGLISAKELQRVLINLGCDNCSLRECKRMIKGVDKNGDGFVDFEEFRSMMQSGFAN* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0181 228 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Gso3g0181 228 PANTHER CALCIUM BINDING PROTEIN 62 225 - -
Gso3g0181 228 ProSitePatterns EF-hand calcium-binding domain. 169 181 IPR018247 -
Gso3g0181 228 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
Gso3g0181 228 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Gso3g0181 228 CDD EFh 76 136 IPR002048 GO:0005509
Gso3g0181 228 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Gso3g0181 228 SMART efh_1 114 142 IPR002048 GO:0005509
Gso3g0181 228 SMART efh_1 76 104 IPR002048 GO:0005509
Gso3g0181 228 SMART efh_1 160 188 IPR002048 GO:0005509
Gso3g0181 228 SMART efh_1 197 225 IPR002048 GO:0005509
Gso3g0181 228 CDD EFh 160 223 IPR002048 GO:0005509
Gso3g0181 228 ProSiteProfiles EF-hand calcium-binding domain profile. 110 145 IPR002048 GO:0005509
Gso3g0181 228 SUPERFAMILY EF-hand 76 225 IPR011992 -
Gso3g0181 228 Gene3D - 157 226 - -
Gso3g0181 228 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Gso3g0181 228 ProSiteProfiles EF-hand calcium-binding domain profile. 193 228 IPR002048 GO:0005509
Gso3g0181 228 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 62 225 - -
Gso3g0181 228 Gene3D - 22 156 - -
Gso3g0181 228 Pfam EF-hand domain pair 76 139 IPR002048 GO:0005509
Gso3g0181 228 Pfam EF-hand domain pair 161 223 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0181 Gso-Chr3 2395291 2396608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0181 76 225 EF-hand Containing Proteins AT1G24620 43.046 6.99e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0181 - - gmx:100778642 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1226 1 48324483 48325829 Gso3g0181 3 2395291 2396608 GST