Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1226 ATGTTGCAACCCTTCACTACTTGCTTTACCTTTCTTCATAGGAAGACCAAATTCTTCCTCAATAAACCAAGAATCAAGGACATGATGAGTGCGTGCCGCAAGAGGAGACAATCCAACAGAAAATTCACTTCAAGTTCTGACTTGTCAACCTCTTCTTTCCTTCACATGGAGCTCTCTACTCAGTTTCATCAAGTTTTCAAGCTTATCGACACTAATGGGGATGGGAAGATATCAGCTACTGAGCTCAGTGAAGTGCTCTCATGCCTTGGATACAACAAGTGCACTGCTGACAAGGAAGCTGAAGGCATGGTGAGAGTGTTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTGATGATTGTCATGAATGGCATGGAAGAAGAAGAAGAAGAAGAGAAATTTGGAAGTGGCATGGAGCATGGTGGTGGTTACCTCATGGATGCTTTTCTTATCTTTGACACTGACAAGAATGGCCTAATTTCAGCCAAGGAACTGCAGAGAGTTCTGATCAATCTAGGGTGTGATAATTGTAGTCTTAGAGAGTGCAAGCGCATGATCAAAGGGGTTGATAAAAATGGAGATGGGTTCGTGGATTTTGAAGAATTTCGATCCATGATGCAAAGTGGACTTGCCAATTAG 645 0.4279 MLQPFTTCFTFLHRKTKFFLNKPRIKDMMSACRKRRQSNRKFTSSSDLSTSSFLHMELSTQFHQVFKLIDTNGDGKISATELSEVLSCLGYNKCTADKEAEGMVRVLDFNGDGFVDLDELMIVMNGMEEEEEEEKFGSGMEHGGGYLMDAFLIFDTDKNGLISAKELQRVLINLGCDNCSLRECKRMIKGVDKNGDGFVDFEEFRSMMQSGLAN* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1226 214 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Gso1g1226 214 CDD EFh 61 121 IPR002048 GO:0005509
Gso1g1226 214 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Gso1g1226 214 ProSiteProfiles EF-hand calcium-binding domain profile. 142 177 IPR002048 GO:0005509
Gso1g1226 214 Gene3D - 7 145 - -
Gso1g1226 214 ProSiteProfiles EF-hand calcium-binding domain profile. 57 92 IPR002048 GO:0005509
Gso1g1226 214 PANTHER CALCIUM BINDING PROTEIN 35 211 - -
Gso1g1226 214 Gene3D - 146 213 - -
Gso1g1226 214 SUPERFAMILY EF-hand 53 210 IPR011992 -
Gso1g1226 214 ProSitePatterns EF-hand calcium-binding domain. 192 204 IPR018247 -
Gso1g1226 214 SMART efh_1 146 174 IPR002048 GO:0005509
Gso1g1226 214 SMART efh_1 183 211 IPR002048 GO:0005509
Gso1g1226 214 SMART efh_1 99 127 IPR002048 GO:0005509
Gso1g1226 214 SMART efh_1 61 89 IPR002048 GO:0005509
Gso1g1226 214 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Gso1g1226 214 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 35 211 - -
Gso1g1226 214 Pfam EF-hand domain pair 61 124 IPR002048 GO:0005509
Gso1g1226 214 Pfam EF-hand domain pair 147 209 IPR002048 GO:0005509
Gso1g1226 214 ProSitePatterns EF-hand calcium-binding domain. 155 167 IPR018247 -
Gso1g1226 214 CDD EFh 146 209 IPR002048 GO:0005509
Gso1g1226 214 ProSiteProfiles EF-hand calcium-binding domain profile. 179 214 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1226 Gso-Chr1 48324483 48325829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1226 147 212 EF-hand Containing Proteins AT1G24620 34.848 3.85e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1226 - - gmx:100799475 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1226 1 48324483 48325829 Gso3g0181 3 2395291 2396608 GST