Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2145 ATGGCGTTCAAAGTGGACCATGAATACGATTACCTCTTCAAGGTCGTATTGATTGGGGACTCCGGGGTTGGAAAATCTAACATCCTTTCCAGATTTACGAGAAATGAGTTCTGCTTGGAATCTAAGTCTACCATTGGGGTTGAATTCGCAACCAGAACATTGCAGGTGGAGGGGAAGACTGTGAAGGCACAAATATGGGACACTGCAGGGCAAGAGAGGTACAGAGCCATCACCAGTGCCTACTACAGAGGAGCTGTTGGTGCCTTGTTGGTCTATGACATAACCAAGAGGCAAACATTTGACAATGTGCAGAGGTGGCTTCGGGAACTACGGGACCACGCAGACTCCAACATTGTTATCATGATGGCTGGAAACAAATCTGACCTGAATCATCTGAGAGCAGTGTCTACTGAGGATGCTCAAAGTTTGGCTGAGAGGGAAGGTTTGTCCTTTCTAGAGACTTCAGCATTGGAGGCATACAATGTTGATAAGGCATTTCAAACCATTTTGTTTGATATATATCACATTATAAGTAAAAAGGCACTGGCAGCACAAGAGGCTACTTCCTCTACTGGCCTTCCACAAGGAACTACCATAAATGTCTCGAATATGGCTGGTAATGCCGGCGGCAATAGAAGTTGTTGCTCTAACTAA 654 0.4526 MAFKVDHEYDYLFKVVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTEDAQSLAEREGLSFLETSALEAYNVDKAFQTILFDIYHIISKKALAAQEATSSTGLPQGTTINVSNMAGNAGGNRSCCSN* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2145 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Gso2g2145 217 SMART ras_sub_4 10 176 - -
Gso2g2145 217 ProSiteProfiles small GTPase Ras family profile. 1 205 IPR001806 GO:0003924|GO:0005525
Gso2g2145 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 178 IPR027417 -
Gso2g2145 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Gso2g2145 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Gso2g2145 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Gso2g2145 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Gso2g2145 217 PRINTS Transforming protein P21 ras signature 151 173 - -
Gso2g2145 217 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Gso2g2145 217 Gene3D - 5 215 IPR027417 -
Gso2g2145 217 Pfam Ras family 14 173 IPR001806 GO:0003924|GO:0005525
Gso2g2145 217 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 217 - -
Gso2g2145 217 SMART ran_sub_2 18 214 - -
Gso2g2145 217 CDD Rab11_like 10 174 - -
Gso2g2145 217 PANTHER - 1 217 - -
Gso2g2145 217 SMART rab_sub_5 13 176 - -
Gso2g2145 217 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Gso2g2145 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2145 Gso-Chr2 46083128 46085673 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2145 K07904 - gmx:100813743 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0554 14 5311747 5314391 Gso2g2145 2 46083128 46085673 GST
Gso18g0293 18 2652139 2654193 Gso2g2145 2 46083128 46085673 PCT
Gso2g2145 2 46083128 46085673 Gso18g0293 18 2652139 2654193 PCT