Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0293 ATGGCATACAAAGTGGACCATGAATACGACTATCTCTTCAAGATCGTACTCATTGGAGACTCTGGTGTTGGAAAATCCAACATTCTCTCTAGGTTTACCCGAAATGAGTTCTGCTTGGAGTCTAAGTCTACCATTGGGGTTGAATTCGCAACCAGAACCTTACAGGTAGAGGGGAAGACTGTGAAGGCACAAATATGGGACACAGCGGGTCAAGAGAGGTACCGAGCTATAACAAGTGCATACTACAGAGGAGCAGTGGGTGCCTTATTGGTGTATGACATAACCAAGAGGCAAACATTTGAGAATGTACAAAGGTGGCTCCGTGAACTGAGGGACCATGCAGACTCCAACATTGTTATTATGATGGCTGGAAACAAGTCTGATCTCAACCATCTCAGAGCAGTCTCTACTGATGATGCTCAGAATTTGGCTGAGAGAGAGGCTCTCTCATTCCTAGAGACTTCAGCATTAGAGGCCTTCAATGTTGAGAAAGCATTTCAAACCATTTTGTTTGACATATACCAAATTATGAGTAAAAAGGCACTGGCTGCACAGGGAGCAGCTTCCACTACTAGCCTTCCTCATGGGACTACCATAAATGTCTCAAATATGTCAGGTAGTGTGGAGAAGAAATCAGCTTGTTGCTCCAATTAA 654 0.4404 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTDDAQNLAEREALSFLETSALEAFNVEKAFQTILFDIYQIMSKKALAAQGAASTTSLPHGTTINVSNMSGSVEKKSACCSN* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0293 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Gso18g0293 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Gso18g0293 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Gso18g0293 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Gso18g0293 217 PRINTS Transforming protein P21 ras signature 151 173 - -
Gso18g0293 217 ProSiteProfiles small GTPase Ras family profile. 1 217 IPR001806 GO:0003924|GO:0005525
Gso18g0293 217 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Gso18g0293 217 SMART ras_sub_4 10 176 - -
Gso18g0293 217 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 216 - -
Gso18g0293 217 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Gso18g0293 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Gso18g0293 217 SMART arf_sub_2 1 180 - -
Gso18g0293 217 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Gso18g0293 217 PANTHER - 1 216 - -
Gso18g0293 217 CDD Rab11_like 10 174 - -
Gso18g0293 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Gso18g0293 217 Gene3D - 5 215 IPR027417 -
Gso18g0293 217 SMART ran_sub_2 18 201 - -
Gso18g0293 217 SMART rab_sub_5 13 176 - -
Gso18g0293 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0293 Gso-Chr18 2652139 2654193 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0293 K07904 - gmx:100799521 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0293 18 2652139 2654193 Gso18g0293 18 2652139 2654193 ECH
Gso18g0293 18 2652139 2654193 Gso14g0554 14 5311747 5314391 PCT
Gso18g0293 18 2652139 2654193 Gso2g2145 2 46083128 46085673 PCT
Gso14g0554 14 5311747 5314391 Gso18g0293 18 2652139 2654193 PCT
Gso2g2145 2 46083128 46085673 Gso18g0293 18 2652139 2654193 PCT