Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0480 ATGTGGCGGTGCGTGGCTCGTGCTATTCGCGTACCAGCTTCGGAGAGATCCATACCTAATCACCAACCACTTAGATCTCACATTTCAAGATTTTTCTCTGGTGGTGGTGGTGGTGGGAGCTCCTCGTACAACGTGGTGGATCACAAGTACGATGCGGTCGTTGTGGGCGCTGGCGGCGCAGGGTTGAGAGCCGCCATTGGACTTTCGGAGCATGGCTTCAACACTGCTTGCATTACAAAGCTGTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGATTGGAGGTGGCACATGTATGACACTGTTAAGGGAAGTGATTGGCTTGGGGACCAAGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCAGTCATTGAGCTTGAGAATTATGGATTGCCATTTTCACGAACTGAAGATGGAAGAATATACCAGCGTGCATTTGGTGGTCAGAGCTTGAACTTCGGAAAAGGTGGTCAGGCATATCGTTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAAGCTATGAGGCATAATACCCAGTTTTTTGTGGAATATTTTGCATTAGATCTATTAATGAACAGTGATGGTACTTGCCAAGGAGTGATTGCCTTGAATATGGAGGACGGAACATTACATCGTTTCCAAGCTTCTTCAACAATTTTGGCCACAGGGGGCTATGGCAGAGCATACTTTTCTGCAACTTCAGCACATACATGCACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGGATACCACTTGAGGATTTAGAGTTTGTACAATTTCACCCAACTGGCATATATGGAGCTGGCTGCCTTATCACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGTGAAGGTGAGAGATTTATGGAACGATACGCACCTACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCTAGGTCAATGACTATGGAAATCCGGGAAGGCCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTTCTTAAGGAGAGGCTACCTGGTATCTCTGAAACAGCTGCTATTTTTGCTGGTGTGGATGTTACTAAGGAACCTATTCCTGTTTTGCCAACAGTGCATTATAACATGGGTGGTATTCCCACAAATCATCATGGAGAGGTGATTACTATTAAAGGTGATGATCCCGATGCAGTAGTTCCTGGATTAATGGCTGCCGGGGAAACAGCCTGTGCTTCAGTCCATGGTGCAAATAGGCTTGGTGCAAATTCACTTCTTGACATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTTCAGAAATCCAAAGGCCAGGAGAGAAACAAAAGCCTTTAGAGAAGGATGCTGGTATGAAAACAATTGCTTGGCTGGACAAATTGAGAAATTCAAACGGGTCGTTGCCAACTTCAAAAATTCGGTTAAATATGCAACGAATAATGCAAAACAATGCTGCTGTGTTCCGTACACAAGAAACGTTAGAAGAAGGTTGTCAATTAATTGATAAAGCATGGGAGAGCTTTCATGATGTCAAGTTGAAGGATCGAAGTTTGATATGGAACTCTGACTTGATTGAGACCATTGAGTTGGAAAATCTTCTGATAAATGCCTGCATCACCATGCACTCTGCTGAAGCAAGAAAAGAGAGTAGAGGTGCTCATGCCCGTGAGGACTTCACAAAAAGAGATGATGAGAAATGGATGAAACATACTTTGGGATATTGGGATAATGAGAAGGTGCGGTTAGATTACAGGCCGGTGCACATGAATACGTTGGATGATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAG 1905 0.4472 MWRCVARAIRVPASERSIPNHQPLRSHISRFFSGGGGGGSSSYNVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGTCQGVIALNMEDGTLHRFQASSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVITIKGDDPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVSEIQRPGEKQKPLEKDAGMKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWMKHTLGYWDNEKVRLDYRPVHMNTLDDEVESFPPKARVY* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0480 634 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 634 - -
Gso2g0480 634 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 85 94 IPR003952 GO:0016491
Gso2g0480 634 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 48 634 IPR011281 GO:0006099|GO:0016627|GO:0050660
Gso2g0480 634 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 51 634 IPR014006 GO:0016627|GO:0022900|GO:0050660
Gso2g0480 634 Pfam Fumarate reductase flavoprotein C-term 503 634 IPR015939 GO:0016491
Gso2g0480 634 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 289 392 IPR027477 -
Gso2g0480 634 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 279 397 IPR027477 -
Gso2g0480 634 Pfam FAD binding domain 51 447 IPR003953 -
Gso2g0480 634 Gene3D - 51 458 IPR036188 -
Gso2g0480 634 Gene3D - 474 584 - -
Gso2g0480 634 SUPERFAMILY FAD/NAD(P)-binding domain 44 470 IPR036188 -
Gso2g0480 634 PIRSF SDHA_APRA_LASPO 40 624 - -
Gso2g0480 634 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 634 IPR030664 -
Gso2g0480 634 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 493 634 IPR037099 GO:0016491
Gso2g0480 634 Gene3D succinate dehydrogenase protein domain 585 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0480 Gso-Chr2 5045379 5052425 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0480 K00234 - gmx:100802169 1267.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0576 11 5135706 5142569 Gso2g0480 2 5045379 5052425 PCT
Gso2g0480 2 5045379 5052425 Gso11g0576 11 5135706 5142569 PCT