Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0576 ATGTGGCGGTGCATCGCACGTGGTCTCCGTGGACCTGCTTCCACCAGATCCACCTCCAATCACTCACTTGGATCTCAACTTTCTAGATTCTTCTCTAGTGGGGCGAACTCCTCGTACACCGTGGTGGATCATACTTATGATGCTGTTGTCGTAGGAGCTGGTGGCGCGGGATTGAGAGCTGCTATTGGACTTTCAGAACACGGGTTCAATACTGCTTGTATTACCAAGCTCTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCTTTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGAGACCAGGATGCCATCCAATATATGTGTAGGGAAGCACCAAAAGCAGTCATTGAGCTAGAGAATTACGGATTACCATTTTCCCGAACAGAGGATGGAAAAATATATCAACGTGCATTCGGCGGTCAAAGCTTAAACTATGGAAAAGGTGGTCAAGCTTACCGATGTGCATGTGCTGCTGATCGAACTGGACATGCTTTATTGCACACTCTCTATGGCCAAGCTATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCATTGGATCTTGTAATGAATAGTGATGGCACTTGCCAAGGAGTGATTGCCTTGAATATGGAGGATGGAACACTACATCGTTTCAAAGCTGCTTCAACAATTTTGGCCACAGGGGGTTATGGTAGAGCATACTTCTCTGCAACCTCAGCACATACTTGCACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGGATCCCTCTTGAGGATTTGGAGTTTGTACAATTTCACCCAACAGGTATATATGGAGCAGGTTGCCTTATCACAGAAGGATCTCGTGGTGAAGGTGGAATTCTTAGGAATAGTGAGGGTGAGCGATTTATGGAACGATATGCCCCTACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCAAGAGCAATGACGATGGAGATTCGGGAAGGTCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTGCTCAAAGAGAGACTTCCTGGCATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCAACTGTACATTATAACATGGGCGGTATTCCCACAAACCATTATGGAGAGGTGGTTACCATTAAAGGTGACAATCCAGATGCAGTGGTTCCTGGATTGATGGCTGCCGGGGAAACGGCCTGTGCATCAGTTCATGGTGCCAATAGGCTTGGTGCAAATTCACTTCTGGATATCGTTGTTTTTGGTAGAGCTTGTGCTAATAGAGTTGCAGAAATCCGTAGACCAGGAGAGAAGCAAAAGCCTCTAGAGAAGGATGCTGGTCAGAGAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGTTCATTGCCAACTTCGCAAATTCGGTTGAATATGCAACGAGTAATGCAAACCAATGCTGCTGTGTTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACATGGGAGAGCTTCCATGATGTCCAGGTGAAGGACCGCAGTTTAATCTGGAACTCCGACTTGATTGAGACTATTGAATTGGAAAATCTTTTGATAAATGCATGCATCACAATGTACTCTGCTGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAAGACTTCAAGGTTAGAGATGATGAGAGCTGGATGAAACACACTGTGGGATTCTGGGAGAACGAGAAAGTCCGGTTGGACTACAGGCCGGTGCATTTGAATGTATTGGATGATGAGGTTGAATCATTCCCTCCCAAGGCTCGGGTGTATTAA 1893 0.4548 MWRCIARGLRGPASTRSTSNHSLGSQLSRFFSSGANSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLVMNSDGTCQGVIALNMEDGTLHRFKAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVTIKGDNPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIRRPGEKQKPLEKDAGQRTIAWLDKLRNSNGSLPTSQIRLNMQRVMQTNAAVFRTQETLEEGCQLIDKTWESFHDVQVKDRSLIWNSDLIETIELENLLINACITMYSAEARKESRGAHAREDFKVRDDESWMKHTVGFWENEKVRLDYRPVHLNVLDDEVESFPPKARVY* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0576 630 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 285 388 IPR027477 -
Gso11g0576 630 PIRSF SDHA_APRA_LASPO 36 619 - -
Gso11g0576 630 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 630 IPR030664 -
Gso11g0576 630 Pfam Fumarate reductase flavoprotein C-term 499 630 IPR015939 GO:0016491
Gso11g0576 630 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 47 630 IPR014006 GO:0016627|GO:0022900|GO:0050660
Gso11g0576 630 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 81 90 IPR003952 GO:0016491
Gso11g0576 630 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 44 630 IPR011281 GO:0006099|GO:0016627|GO:0050660
Gso11g0576 630 Gene3D succinate dehydrogenase protein domain 582 630 - -
Gso11g0576 630 Gene3D - 47 454 IPR036188 -
Gso11g0576 630 Gene3D - 470 581 - -
Gso11g0576 630 Pfam FAD binding domain 47 443 IPR003953 -
Gso11g0576 630 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 275 393 IPR027477 -
Gso11g0576 630 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 630 - -
Gso11g0576 630 SUPERFAMILY FAD/NAD(P)-binding domain 38 466 IPR036188 -
Gso11g0576 630 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 489 630 IPR037099 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0576 Gso-Chr11 5135706 5142569 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0576 K00234 - gmx:100818379 1260.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0576 11 5135706 5142569 Gso11g0576 11 5135706 5142569 ECH
Gso11g0576 11 5135706 5142569 Gso2g0480 2 5045379 5052425 PCT
Gso2g0480 2 5045379 5052425 Gso11g0576 11 5135706 5142569 PCT